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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028004 ID=TCONS_00028004|Name=TCONS_00028004|organism=Clytia hemisphaerica|type=transcript|length=2325bp
TATGGTGATCAAATTGAATCTAATAAAAACACGTTCGACATTTTTGAAAG
TGAAATCTTCAATATCGTGGAAAATTCAAATTGTATCTACAGCAAATCTT
CTGCAAATATTGAACTTATTGAAGAAATGGAATTTTCAGCAAAACATCCA
ACGCtttttaaaaaacaatctgaaaaaATAAATGCAGTTAATCCTGGTGA
AGAGGTTGTGTTACGGAGTGAAAAGCTAGAGAATGATGAATTATTTGTTA
AAACTATTGAACCTAAAGCTAAAAAGATTGAACCACTGGTAATTCAAAAT
CTCAAATTCTCTACACAAAATCCCCAAAGAAACCATCCACCTGAATGTCT
TAACAATGTTTTAGCTATGgaacatcaaaatatttctaGTAAAGTTTCAG
CTGGTGACTTAGAAATCAAATCATTGCCGCTAATGGGAAAACAAAACCTC
TTTGGCCCAAAGCCCCATAGAATATACGTGGATGAAGGTAATAACCAATC
TAAAGAACAACTAAACATTCCTGGACACACTGAGATAACCAACGGTCTTG
AATCCGGAGAAATCGATTCTTCTTCTGGTGATTTGACGAAGAACGCCAAT
GAAAATGATGACCCTTGGTTTCATTGTCTTGAATGTGGTTCACAATTCCT
TCGTAAACACAAGTTAGTCATACATTTGAGAAAGGAGCATGGGTTGAAAC
ACGAATTGAACAAATATGTGACCATGAAACAATGTATCAAAGAACATGGA
GGCGAACATATTCCTTTGCTTTGCCCCAAACGTAAATGCAAAGAATATGT
ATGTAGTGGTGACATTTTTAAAACACACATGAAGATATATCATAAGAAAA
GTTTCTCTGATTTGAAAATTGCTAAATTGATTGAAGGCCAATGGAACGGG
CGTACGAGTATTAAATCCAAAGATATTTGGTTTGGTCCGTATAATAATAA
AACGACAGAAAATTCTGAATCATGGGACAACTACAATCTTCAATCCGATT
ATCCGTCACTTAAATGTCAAAAGACGGTGAAAGTTTTCACATCAAACGTA
AGCGAATCTTTACACACCAAAGAAAATGGAGTTGAGTTTGAATCAGTTGA
AAACTCCTTTTCCAAAATCGACAAATCATTCGAACCTGCTGACAGTCTTC
CATATCTTTCgtcaaaatcaccaaatttaAAGAACTTTGAAATATGTAAT
GAACCTGATGCAACCTTGTCAATAGATCAACTACCAAAGTCTGAAGTCGG
TAAATTCGATTCTCCCGTTCGGATTAAGACGGAAAAATTCATCACTGTTA
CACCCGTAGAAAGAAACCCTCCTTATCGCGTTGAACAGGCTAATAAAGTA
TTAACTCCAACGGAAATTCTTGCAATtgtcaaaaatcaaacaaagatttc
tCAAGTAAAGTATAAAGCGTGCTCCGTACAAGATGAAGCGAAAGTTGCAC
TGATAGAGATCCCTAAGAAATTAACCAGAGAGGAAGGACAGAATACTCCA
AAAGTGAACTCTGTACATCTTCAATCGAGTATCCTTCGTTCTTCTGGTGA
GGAGAAAATTCTTATAACACCGTCAACTAAAGAAGGAAAAGGTGTCCTTA
ACATTGTCAACAGTATTGATTACACGAACTTGTCAGAAGATGCCGACTGT
GGGTCTTCAGAGAACCGAAAGTCTGCTCATTTAGAAGTGGATTATAATAA
TCGTTTTCAATGCGCAAATGAAACTAAGAATATGTTCATGGAAAACTCGT
TTAGTGTAAGAATGAATCCTTCCTCGAATCTGCTGATACCAAAACGAAAG
CTTTTTCAAGACTCGATACAGTCGGACGTCGACAATATACAACCGAGATG
TCAAAAGGAAAGCCAATTACATTCGAAGGTTGTTAAGgaCTTCGTAACAG
ATGTTGAAAACGTTGCCACAATGACCAAAATATTCATCAGtaaagCACCC
GAGTTGGAGAGCAAATTGACATCAATCTGTAAAGAAGTGTTGAAAGAAAT
GTCCCAACCTTTAAAACAGAATTTAGCTTCGAACTATCAGAACAAGCGGG
GTTTGTAACGACCATTATCTGTGATGTGCTATTATTGTCGTGTTTTATGT
CGTGTTTttgtgtttgttgtttttttaataaaatcttcatATCGTGTTTT
CGAAGGTATTTTACGCATTGTAAAGCCTTGCGTTCTGCGACATTTAGCTT
GATACAGATTTAGATGTCGGACTACCCAAGACTACCTATACTTTCCGTAT
TCTAGTACACATTtctttatgagaacaaactatataataacACAAGTCtt
ccatggccaaaatattaagaacaag Run BLAST on NCBI transcript from alignment at sc0000661:33600..38054+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028004 ID=TCONS_00028004|Name=TCONS_00028004|organism=Clytia hemisphaerica|type=transcript|length=4455bp|location=Sequence derived from alignment at sc0000661:33600..38054+ (Clytia hemisphaerica)
TATGGTGATCAAATTGAATCTAATAAAAACACGTTCGACATTTTTGAAAG
TGAAATCTTCAATATCGTGGAAAATTCAAATTGTATCTACAGCAAATCTT
CTGCAAATATTGAACTTATTGAAGAAATGGAATTTTCAGCAAAACATCCA
ACGCtttttaaaaaacaatctgaaaaaATAAATGCAGTTAATCCTGGTGA
AGAGGTTGTGTTACGGAGTGAAAAGCTAGAGAATGATGAATTATTTGTTA
AAACTATTGAACCTAAAGCTAAAAAGATTGAACCACTGGTAATTCAAAAT
CTCAAATTCTCTACACAAAATCCCCAAAGAAACCATCCACCTGAATGTCT
TAACAATGTTTTAGCTATGgaacatcaaaatatttctaGTAAAGTTTCAG
CTGGTGACTTAGAAATCAAATCATTGCCGCTAATGGGAAAACAAAACCTC
TTTGGCCCAAAGCCCCATAGAATATACGTGGATGAAGGTAATAACCAATC
TAAAGAACAACTAAACATTCCTGGACACACTGAGATAACCAACGGTCTTG
AATCCGGAGAAATCGATTCTTCTTCTGGTGATTTGACGAAGAACGCCAAT
GAAAATGATGACCCTTGGTTTCATTGTCTTGAATGTGGTTCACAATTCCT
TCGTAAACACAAGTTAGTCATACATTTGAGAAAGGAGCATGGGTTGAAAC
ACGAATTGAACAAATATGTGACCATGAAACAATGTATCAAAGAACATGGA
GGCGAACATATACCTTTGCTTTACCCCAAACGTAAATGTAAAGAATATAT
ATGTAGTGGTGACATTTTTAAAACACACATGAAGATATATCATAAGAAAA
GTTTCTCTGAtttgaaaattgcaaaattgaTTGAAAGCCAATGGAACGGG
TGGACGAATATTAAATCCAAAGATATTTGGTTTGGTCCGTATAATAATAA
AACGACAGAAAATTCTGAATCATGGGACAACTACAATCTTCAATCCGATT
ATCCAtcccttaaatgtcaatatgaaaagaCGATGAAAGTTTTCACATCA
AACGTAAACGAATCTTTATACACCGAAAACGATTCCTTTCCTAGAATCGA
CAAATTATTCGAATCTGCTGATAGCCTTCCATATCTTTCGTCGAAATCAC
CAAATTTAAAGAACTTTGAAATATGTAATGAACCTGTCAAGAGCACCTTG
TCATTAGATCAACTACCAAAGTCGGAATTCAGTAAATCTGATTCTCCCGT
TCGGATTAAAATGGAAAAAGACATCACTGTTACACCCGTAGAAAGTCACC
CTCTTTGTCGCATCGAACAGGCTAACAAAGCATTGACACCAGCGGAAATT
CTTGCAATtgtcaaaaatcaaacaaagatttctCAAGTAAAGTATAAAGC
GTGCTCCGTACAAGATGAAGCGAAAGTTGCACTGGTAGAGATCCCTAAGA
AATTAACCAGAGAGGAAGGACAGAATACTCCAATAGTGGACTCTGTACAT
CATCAATCGAGTATCCTTCGTTCTTCTGACGAGGAGAAAATTCTTATAAC
ACCGTCAACTAAAGAAGGAAAAGGTGTCCTTAACATTGTCAACAGTATTG
ATTACACGAACTTGTCAGAAGATGCCGACTGTGGGTCTTCAGAGAGCCGA
AAGTCTGCTCATTTAGAAGTGGATTATAATAATCGTTTTCAATGCGCAAA
TGAAACTCAGAATANATGATATGACGAAGAACGCCAATGAAAACGATGAC
CCTTGGTTTCATTGTCTTGAATGTGGTTCACAATTCCTTCGTAAACACAA
GTTAGTCATACATTTGAGAAAGGAGCATGGGTTGAAACACGAGCTGAACA
AATATGTGACCATGAAACAATGTATAAAGGAACATAGAGGCGAACATATT
CCTTTGCTTTGCCCCAAACGTAAATGCAAAGAATATGTATGTAGTGGTGA
CATTTTTAAAACACACATGAAGATATATCATAAGAAAAGTTTCTCTGATT
TGAAAATTGCTAAATTGATTGAAGGCCAATGGAACGGGCGTACGAGTATT
AAATCCAAAGATATTTGGTTTGGTCCGTATAATAATAAAACGACAGAAAA
TTCTGAATCATGGGACAACTACAATCTTCAATCCGATTATCCGTCACTTA
AATGTCAAAAGACGGTGAAAGTTTTCACATCAAACGTAAGCGAATCTTTA
CACACCAAAGAAAATGGAGTTGAGTTTGAATCAGTTGAAAACTCCTTTTC
CAAAATCGACAAATCATTCGAACCTGCTGACAGTCTTCCATATCTTTCgt
caaaatcaccaaatttaAAGAACTTTGAAATATGTAATGAACCTGATGCA
ACCTTGTCAATAGATCAACTACCAAAGTCTGAAGTCGGTAAATTCGATTC
TCCCGTTCGGATTAAGACGGAAAAATTCATCACTGTTACACCCGTAGAAA
GAAACCCTCCTTATCGCGTTGAACAGGCTAATAAAGTATTAACTCCAACG
GAAATTCTTGCAATtgtcaaaaatcaaacaaagatttctCAAGTAAAGTA
TAAAGCGTGCTCCGTACAAGATGAAGCGAAAGTTGCACTGATAGAGATCC
CTAAGAAATTAACCAGAGAGGAAGGACAGAATACTCCAAAAGTGAACTCT
GTACATCTTCAATCGAGTATCCTTCGTTCTTCTGGTGAGGAGAAAATTCT
TATAACACCGTCAACTAAAGAAGGAAAAGGTGTCCTTAACATTGTCAACA
GTATTGATTACACGAACTTGTCAGAAGATGCCGACTGTGGGTCTTCAGAG
AACCGAAAGTCTGCTCATTTAGAAGTGGATTATAATAATCGTTTTCAATG
CGCAAATGAAACTAAGAATATGTTCATGGAAAACTCGTTTAGTGTAAGAA
TGAATCCTTCCTCGAATCTGCTGATACCAAAACGAAAGCTTTTTCAAGAC
TCGATACAGTCGGACGTCGACAATATACAACCGAGATGTCAAAAGGAAAG
CCAATTACATTCGAAGGTTGTTAAGGTACAACAAATCTTTTTGTGTTTCC
ATTTGACCTTTATGCCTTATAAACGCCATCCcctgtatcccgctgcatac
ggtttgtttacaaatttcgtcagtacttttatgccctttaattttagaaa
aaatatgtagctatcaaaagaaaaattccctctttgctctaaatagcctg
attttaatTTATTATCTCCCTTACATGTTCAGCTGTACATTTCCCATCAT
CCAGgaaattacccccccccctagtttattaaagattttttcattctttt
gttttaggaCTTCGTAACAGATGTTGAAAACGTTGCCACAATGACCAAAA
TATTCATCAGGTAAAATATAACGATGTTTTATagtgaatttttctaaaat
gtaaTCTcgataatttaaaaaataatcctaATTTCTCGTGCTGATTTTCT
GCCAGGGCCATTTTCTGGAAAGGTAATGTAAACTGTAGAATGTACATTTG
ACTTGAGGTAATTGTGAAATTTAATTGCTTGTAGAATTTTTAGATTAGGT
AAGATGTTTAGATTTCTAACTACTTTTatctaggctgctggcatccattA
ACGGATTTGTgctcctatactacctggggttttgtagaggtctgaaATTC
AGACTAAACTACTTCGTGTTCTTCGTTGAGGTCATCGAACTTAATATAAA
CACCCTGGAAGTTTTTGAAAGTTGTACTTTATAAATGTAATtagttaagg
cttggggacacgagaagtctttttcgcgttggtgcaatgcaacatgctcc
ttcccaccaacacaagaaaaaaatgcgtgtctcatggtttcttcttttat
ttcatgggacaaaaagtgagggaaatacccaaaagacacgctgattttgt
ccaacgaaagtgagatttcacttttattggtagaaagaaaaatggggtgg
agacacgagaaagcgttttaggttggtgggatggagcatgttgcaatgca
ccaacgcgaaaaagacttcttgtgtccccaagccttaagtcAACCAATCT
ATcacgtttttcattttcagtaaagCACCCGAGTTGGAGAGCAAATTGAC
ATCAATCTGTAAAGAAGTGTTGAAAGAAATGTCCCAACCTTTAAAACAGA
ATTTAGCTTCGAACTATCAGAACAAGCGGGGTTTGTAACGACCATTATCT
GTGATGTGCTATTATTGTCGTGTTTTATGTCGTGTTTttgtgtttgttgt
ttttttaataaaatcttcatATCGTGTTTTCGAAGGTATTTTACGCATTG
TAAAGCCTTGCGTTCTGCGACATTTAGCTTGATACAGATTTAGATGTCGG
ACTACCCAAGACTACCTATACTTTCCGTATTCTAGTACACATTtctttat
gagaacaaactatataataacACAAGTCttccatggccaaaatattaaga
acaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028004-exon-sc0000661-1491911889:33600..34350 | TCONS_00028004-exon-sc0000661-1491911889:33600..34350 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1510915933:33600..34350 | TCONS_00028004-exon-sc0000661-1510915933:33600..34350 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1575043694:33600..34350 | TCONS_00028004-exon-sc0000661-1575043694:33600..34350 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1491911889:35489..36624 | TCONS_00028004-exon-sc0000661-1491911889:35489..36624 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1510915933:35489..36624 | TCONS_00028004-exon-sc0000661-1510915933:35489..36624 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1575043694:35489..36624 | TCONS_00028004-exon-sc0000661-1575043694:35489..36624 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1491911889:36907..36959 | TCONS_00028004-exon-sc0000661-1491911889:36907..36959 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1510915933:36907..36959 | TCONS_00028004-exon-sc0000661-1510915933:36907..36959 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1575043694:36907..36959 | TCONS_00028004-exon-sc0000661-1575043694:36907..36959 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1491911889:37670..38054 | TCONS_00028004-exon-sc0000661-1491911889:37670..38054 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1510915933:37670..38054 | TCONS_00028004-exon-sc0000661-1510915933:37670..38054 | Clytia hemisphaerica | exon |
| TCONS_00028004-exon-sc0000661-1575043694:37670..38054 | TCONS_00028004-exon-sc0000661-1575043694:37670..38054 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000661 | supercontig | sc0000661:33600..38054 + |
Blast
The following BLAST results are available for this feature:
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