TCONS_00053338-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053338-protein
Unique NameTCONS_00053338-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053338-protein ID=TCONS_00053338-protein|Name=TCONS_00053338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=760bp
MLSFLMFYIFFICFSTSDARHVNTTLRLSGSENPFEGNVEILYKGQWKYI
CDDYWDIRDAKVVCRQLGYTKAIIATRMSTYKRNHNSSYWLDNVQCWGSE
PDIDACRHRSYGSHNCKHGTELAGVVCTNVTDVDVKKPVPSIASGQEVED
IKLRLIGPSKDGFVSEGFLEINVDGVWGGVCADKWTGVESFVACGNLGYP
DVDESEFNKQTRLIYKEKSTDIYWMTKVYCNGMESTLYECHHAGWKKHTC
KSKPVYLTCKRSPFIKGSRFDKIDINNHDIRFRAGSRHSEGRVEVRYQGR
WGTICDDGWDITDANVACRQMGFGSAFEAVHYAGFGEGVGKVWLDQVMCL
GTEKNIHNCSHLGWGVGDCGHPEDAGVKCHFPYTGDQEEGKLRVIGGPHQ
RLGRLEVFTDGVWQGICGMGFGPREAEVACRQAGLGYAIRGFSTSKYGLS
RRKGLYNIKCSGDELRLQYCHHETDKTGRCRYYEMASVECSRYAPDIVMD
YRQMKKSMRIESVSLVNLQCAFEEKCLSNTAKNYITYPFLFERTLIRFTS
RFWNRGTTDFRPNIAKNHWEWHDCHSHFHSMERFADYDLVDSKGRKRSDG
QKASFCLEDSMCDHSVSKRYNCTGKGDQGISVGCADNYKFNIDCQWIDVT
DLEYGLYTLRVIVNPLRKALESDYLNNVVICKINFISQKRIDVQSCKLDD
ECLHLSHGGTADGACCKFPFLYKGKEYRSCTTKGTEKFKKQFMWCSATTD
YDRDKLWGLC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033659XLOC_033659Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053338TCONS_00053338Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001190SRCR
IPR001695Lysyl_oxidase
IPR017448SRCR-like_dom
IPR000562FN_type2_col-bd
IPR013806Kringle-like
Vocabulary: Molecular Function
TermDefinition
GO:0005044scavenger receptor activity
GO:0016641oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor
GO:0005507copper ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016020 membrane
molecular_function GO:0005507 copper ion binding
molecular_function GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor
molecular_function GO:0005044 scavenger receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001190SRCR domainPRINTSPR00258SPERACTRCPTRcoord: 368..380
score: 62.55
coord: 280..296
score: 39.96
coord: 299..310
score: 75.16
coord: 345..359
score: 41.51
coord: 314..324
score: 57.29
IPR001190SRCR domainPFAMPF00530SRCRcoord: 165..260
e-value: 8.9E-20
score: 71.0
coord: 396..491
e-value: 1.3E-15
score: 57.6
coord: 284..379
e-value: 2.5E-28
score: 98.4
coord: 30..127
e-value: 5.8E-27
score: 94.0
IPR001190SRCR domainPROSITEPS00420SRCR_1coord: 285..322
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 26..128
score: 27.535
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 153..260
score: 20.553
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 280..380
score: 31.13
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 392..491
score: 20.171
IPR001695Lysyl oxidasePRINTSPR00074LYSYLOXIDASEcoord: 644..663
score: 60.0
coord: 504..528
score: 40.0
coord: 621..643
score: 39.13
coord: 573..593
score: 52.38
coord: 664..681
score: 59.72
coord: 551..572
score: 50.0
IPR001695Lysyl oxidasePFAMPF01186Lysyl_oxidasecoord: 495..697
e-value: 4.0E-77
score: 258.4
NoneNo IPR availablePRINTSPR00013FNTYPEIIcoord: 744..759
score: 51.08
coord: 724..736
score: 44.41
coord: 713..722
score: 58.27
NoneNo IPR availableGENE3D4.10.790.10coord: 329..379
e-value: 1.9E-19
score: 69.1
coord: 72..127
e-value: 2.6E-16
score: 59.1
NoneNo IPR availableGENE3D1.20.5.950coord: 278..328
e-value: 1.9E-20
score: 71.7
coord: 23..71
e-value: 4.5E-17
score: 60.8
IPR017448SRCR-like domainSMARTSM00202SR_3coord: 280..380
e-value: 2.5E-47
score: 173.2
coord: 26..128
e-value: 1.5E-46
score: 170.6
coord: 153..260
e-value: 1.3E-13
score: 61.2
coord: 392..491
e-value: 4.8E-21
score: 85.9
IPR017448SRCR-like domainGENE3D3.10.250.10coord: 386..491
e-value: 4.1E-21
score: 74.8
coord: 148..260
e-value: 5.9E-20
score: 71.1
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 389..498
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 25..131
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 277..380
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 151..260
IPR000562Fibronectin, type II, collagen-bindingSMARTSM00059FN2_2coord: 709..760
e-value: 4.4E-15
score: 66.1
IPR000562Fibronectin, type II, collagen-bindingGENE3D2.10.10.10coord: 705..760
e-value: 1.2E-16
score: 59.9
IPR000562Fibronectin, type II, collagen-bindingPFAMPF00040fn2coord: 716..760
e-value: 1.5E-13
score: 50.7
IPR000562Fibronectin, type II, collagen-bindingPROSITEPS51092FN2_2coord: 711..760
score: 18.382
IPR000562Fibronectin, type II, collagen-bindingCDDcd00062FN2coord: 710..760
e-value: 1.38886E-13
score: 65.4046
IPR013806Kringle-like foldSUPERFAMILY57440Kringle-likecoord: 707..760

Blast
[Close]
BLAST of TCONS_00053338-protein vs. Swiss-Prot (Human)
Match: LOXL2 (Lysyl oxidase homolog 2 OS=Homo sapiens GN=LOXL2 PE=1 SV=1)

HSP 1 Score: 455.292 bits (1170), Expect = 2.106e-149
Identity = 269/699 (38.48%), Postives = 381/699 (54.51%), Query Frame = 0 
Query:   17 SDARHVNTTLRLSGSENPF-EGNVEILYKGQWKYICDDYWDIRDAKVVCRQLGYTKAIIATRMSTYKRNHNSSYWLDNVQCWGSEPDIDACRHRSYGSHNCKHGTELAGVVCTNVTDVDVKKPVPSIASGQ----EVEDIKLRLIGPS--KDGFVSEGFLEINVDGVWGGVCADKWTGVESFVACGNLGYPDVDESEFNKQTRLIYKEKSTDIYWMTKVYCNGMESTLYECHHAG------WKKHTCKSK-PVYLTCKRSPFIKG---SRFDKI-DINNHDIRFRAGSRHSEGRVEVRYQGRWGTICDDGWDITDANVACRQMGFGSAFEAVHYAGFGEGVGKVWLDQVMCLGTEKNIHNCSHLGWGVGDCGHPEDAGVKCHFPYTGDQEEGKLRVIGGPHQRLGRLEVFTDG----VWQGICGMGFGPREAEVACRQAGLGYAIRGFSTSKYGL----SRRKGLYNIKCSGDELRLQYCHHETDKT----GRCRYYEMASVECSRYAPDIVMDYRQMKKSMRIESVSLVNLQCAFEEKCLSNTAKNYITYPFLFERTLIRFTSRFWNRGTTDFRPNIAKNHWEWHDCHSHFHSMERFADYDLVDSKGRKRSDGQKASFCLEDSMCDHSVSKRYNCTGKGDQGISVGCADNYKFNIDCQWIDVTDLEYGLYTLRVIVNPLRKALESDYLNNVVICKINF 685
            + A      LRL+G +    EG VE+ Y GQW  +CDD + I  A VVCR+LGY +A   T  S+Y +      WLDN+ C G+E  + AC    +G  +CKH TE  GVVC++      K     I   +    +VEDI++R I  +  K   V EG++E+     W  +C   WT   S V CG  G+P   E  +N +   ++  +    YW   + C G E+ +  C           K  TC++  P  ++C           SRF K        +R R G+   EGRVEV   G WGT+CDD WD+  A+V CR++GFGSA EAV  +  G+G+G + L+++ C G EK+I +C       G C H EDAGV+C+ P  G Q+  KLR+ GG +   GR+EV  +     VW  +CG  +G  EA V CRQ GLG+A   F  + Y      S +  +  +KCSG EL L +C H+ +      G  +Y   A V CS  APD+V++   ++++  +E   +  LQCA EE CLS +A    T P    R L+RF+S+  N G +DFRP   ++ W WHDCH H+HSME F  YDL++  G K ++G KASFCLED+ C+  + K Y C   GDQGI++GC D Y+ +IDCQW+D+TD+  G Y  +V++NP  +  ESDY NN++ C+  +
Sbjct:   49 APANVAKIQLRLAGQKRKHSEGRVEVYYDGQWGTVCDDDFSIHAAHVVCRELGYVEAKSWTASSSYGKGE-GPIWLDNLHCTGNEATLAACTSNGWGVTDCKH-TEDVGVVCSDKRIPGFKFDNSLINQIENLNIQVEDIRIRAILSTYRKRTPVMEGYVEVKEGKTWKQICDKHWTAKNSRVVCGMFGFPG--ERTYNTKVYKMFASRRKQRYWPFSMDCTGTEAHISSCKLGPQVSLDPMKNVTCENGLPAVVSCVPGQVFSPDGPSRFRKAYKPEQPLVRLRGGAYIGEGRVEVLKNGEWGTVCDDKWDLVSASVVCRELGFGSAKEAVTGSRLGQGIGPIHLNEIQCTGNEKSIIDCKFNAESQG-CNHEEDAGVRCNTPAMGLQK--KLRLNGGRNPYEGRVEVLVERNGSLVWGMVCGQNWGIVEAMVVCRQLGLGFASNAFQETWYWHGDVNSNKVVMSGVKCSGTELSLAHCRHDGEDVACPQGGVQY--GAGVACSETAPDLVLNAEMVQQTTYLEDRPMFMLQCAMEENCLSASAAQ--TDPTTGYRRLLRFSSQIHNNGQSDFRPKNGRHAWIWHDCHRHYHSMEVFTHYDLLNLNGTKVAEGHKASFCLEDTECEGDIQKNYECANFGDQGITMGCWDMYRHDIDCQWVDITDVPPGDYLFQVVINPNFEVAESDYSNNIMKCRSRY 736
The following BLAST results are available for this feature:
BLAST of TCONS_00053338-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOXL22.106e-14938.48Lysyl oxidase homolog 2 OS=Homo sapiens GN=LOXL2 P... [more]
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