TCONS_00052558-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052558-protein
Unique NameTCONS_00052558-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052558-protein ID=TCONS_00052558-protein|Name=TCONS_00052558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MDGLVDCILIKILQWLDVRHLCICSQVCHDWRRVAYDSELWADINLCPFR
WKLDEQAIVRLIHTRFQPLMRKLNLTSFSLTPKMFTELQVRCPNLQSLIL
ENVNFIGFSESYKDSYNFPERLFHLDIRYSSGDPIAYEIITENLTTLHSI
GITNSLLSSVNNIKIIRNLRNIRVLDFSHCNSLNDATLVLLGTFCTKLTS
LSLNHCNNVRGNDLSFIIEHCPLLKALCFNGTSLDDTSLLRCNWGNIALE
ELDISWCRNITERGLIQVLPCLKNLEYLRLCSCGFGHAITDNVLQVLTGH
QKLQFVDVSYSREITDEGVSKAISTLPSLKQIRINSCRKLSPRLFNMITA
NDKVLVIPSFVNTGDDSFQAGGNSLFAASRLMVSITQPCSELRKYTLDNM
LQKPLRNR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033238XLOC_033238Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052558TCONS_00052558Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 4..44
e-value: 4.7E-5
score: 32.8
IPR001810F-box domainPFAMPF12937F-box-likecoord: 8..45
e-value: 1.8E-8
score: 34.0
IPR001810F-box domainPROSITEPS50181FBOXcoord: 1..44
score: 9.577
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 3..60
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 246..271
e-value: 0.16
score: 21.1
coord: 195..220
e-value: 140.0
score: 5.5
coord: 326..351
e-value: 350.0
score: 2.5
coord: 272..300
e-value: 250.0
score: 3.7
coord: 169..194
e-value: 65.0
score: 8.2
NoneNo IPR availableGENE3D1.20.1280.50coord: 1..32
e-value: 1.8E-11
score: 43.3
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 121..342
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 229..354
e-value: 5.9E-18
score: 64.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 33..228
e-value: 1.5E-12
score: 46.4

Blast
[Close]
BLAST of TCONS_00052558-protein vs. Swiss-Prot (Human)
Match: FBXL2 (F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.668e-20
Identity = 90/318 (28.30%), Postives = 146/318 (45.91%), Query Frame = 0 
Query:    8 ILIKILQWLDVRHLCICSQVCHDWRRVAYDSELWADINLCPFRWKLD-EQAIVRLIHTRFQPLMRKLNLTS-FSLTPKMFTELQVRCPNLQSLILENVNFIGFSESYKDSYNFPERLFHLDIRYS-SGDPIAYEIITENLTTLHSIGITNSLLSSVNNIK-IIRNLRNIRVLDFSHCNSLNDATLVLLGTFCTKLTSLSLNHCNNVRGNDLSFIIEHCPLLKALCFNGTS-LDDTSLLRCNWGNIALEELDISWCRNITERGLIQVLPCLKNLEYLRLCSCGFGHAITDNVLQVLTGH-QKLQFVDVSYSREITDEGV 319
            +L++I  +LD+  LC C+Q+   W  +A D   W  I+L  F ++ D E  +V  I  R    +RKL+L     +           C N++ L L     I  S  Y  S  F  +L HLD+    S    + + I+E    L  + ++     + + I+ ++R  R ++ L    C  L D  L  +  +C +L SL+L  C+ +    +  I   C  L+ALC +G S L D SL         L+ L+ + C ++T+ G   +      LE + L  C     ITD+ L  L+ H  KLQ + +S+   ITD+G+
Sbjct:   19 LLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDL--FNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLS-RFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECIL---ITDSTLIQLSIHCPKLQALSLSHCELITDDGI 330
The following BLAST results are available for this feature:
BLAST of TCONS_00052558-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBXL21.668e-2028.30F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL... [more]
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