TCONS_00027966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027966
Unique NameTCONS_00027966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027966 ID=TCONS_00027966|Name=TCONS_00027966|organism=Clytia hemisphaerica|type=transcript|length=499bp
GTACCCATTCATTTTAAGTGTTTCAACGTCTGAACATTTGTCAAGGCTGC
ATGCCTTGATGTTGAGATATGAACCAAGTTCTTCAGCTTCAGCAATTTGA
TTCCGTATCAGATTTTGTAAAGGCGAAACCACAAGAACAATTGGGTGCTT
CGAACTGTTGGGAAGGGCCCGGAAGATTGAAGGAAGTAACTGATAAATCA
TACTTTTTCCATATGCGGTAGGAAGGATAGCAAGAGTATCTTTACCAGCA
ACAACATTNAAGTAGCTGATAAATCATACTTTTTCCATATGCGGTAGGAA
GGATAGCAAGAGTATCTTTACCAGCAACAACATTTTCGATGCAGTCCATC
TGCTTTCTCTTCAACGAGAAATTTGAATCAACTTTCTTAATTGCATCAGT
AGCAATTTTTTCTAGAGTTAGAGAAGATTGTTCAGTCATTTGTGACTTAA
AAGCATCAACTTGTGCAGCAGCCATTTTCTAATGtgatgttgttataaa
Run BLAST on NCBI

transcript from alignment at sc0000658:190247..190745

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027966 ID=TCONS_00027966|Name=TCONS_00027966|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at sc0000658:190247..190745 (Clytia hemisphaerica)
tttataacaacatcaCATTAGAAAATGGCTGCTGCACAAGTTGATGCTTT
TAAGTCACAAATGACTGAACAATCTTCTCTAACTCTAGAAAAAATTGCTA
CTGATGCAATTAAGAAAGTTGATTCAAATTTCTCGTTGAAGAGAAAGCAG
ATGGACTGCATCGAAAATGTTGTTGCTGGTAAAGATACTCTTGCTATCCT
TCCTACCGCATATGGAAAAAGTATGATTTATCAGCTACTTNAATGTTGTT
GCTGGTAAAGATACTCTTGCTATCCTTCCTACCGCATATGGAAAAAGTAT
GATTTATCAGTTACTTCCTTCAATCTTCCGGGCCCTTCCCAACAGTTCGA
AGCACCCAATTGTTCTTGTGGTTTCGCCTTTACAAAATCTGATACGGAAT
CAAATTGCTGAAGCTGAAGAACTTGGTTCATATCTCAACATCAAGGCATG
CAGCCTTGACAAATGTTCAGACGTTGAAACACTTAAAATGAATGGGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015825XLOC_015825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027966-exon-sc0000658-1491911889:190247..190745TCONS_00027966-exon-sc0000658-1491911889:190247..190745Clytia hemisphaericaexon
TCONS_00027966-exon-sc0000658-1510915933:190247..190745TCONS_00027966-exon-sc0000658-1510915933:190247..190745Clytia hemisphaericaexon
TCONS_00027966-exon-sc0000658-1575043694:190247..190745TCONS_00027966-exon-sc0000658-1575043694:190247..190745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000658supercontigsc0000658:190247..190745 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.244674	0.119298	0	0.40655	1.48481	1.04294	2.35925	1.76696	0.412364	2.26846	1.59373	0.488855	0.195019	1.07848	0.069467	0	0	0.0941309	0	0	0.118282	0	0	0	0.262696	0.117225	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top