TCONS_00052166-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052166-protein
Unique NameTCONS_00052166-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052166-protein ID=TCONS_00052166-protein|Name=TCONS_00052166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MPRKGDKRKRRSDDESSSGASTSKNAKNTKKEETPAIEEVTTIPAVFTKS
GKVLAFGQGDVGQLGLGDEVLERKRPALVKEVDDIKFIQSVCGGMHTVIL
TEDGEVYTFGCNDEGALGRATSGTDDEEYYARKVALPDGVKIIQVSAGDS
HTAALSDKGEVYAWGAYRDASGQMGLTAASLGKKNEIRKIYPKGDEIEDP
AIKVASGNDHTVILTKDGSIYTNGTGEQGQLGRLKECFGHRGGRRGLDFL
LSPQLVRFRRKVRFSDIFTGSFCTFALSSDTNDVYAWGLNNYGQLGSGTN
DNYFNPKVIKPLTEIRNQSKSNQMVIQGGQHHSIMVDGEGIVYSFGRAEY
GRLGLGTDAKETAVPVKVPKLADKKVKDVACGESVSYAVTEKGQLYSWGF
GTTLQLGVGDDDDIYEPELVKSKNLDPETDEVLTISGGGQHVSLVVCKKE
NTANGHES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033031XLOC_033031Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052166TCONS_00052166Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 87..100
score: 48.81
coord: 52..68
score: 62.75
coord: 204..220
score: 56.86
coord: 220..234
score: 65.56
coord: 388..409
score: 54.55
coord: 106..122
score: 80.39
coord: 329..347
score: 50.0
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 158..214
e-value: 1.3E-5
score: 25.6
coord: 339..388
e-value: 2.5E-12
score: 47.1
coord: 217..277
e-value: 2.0E-7
score: 31.4
coord: 392..442
e-value: 1.7E-7
score: 31.6
coord: 283..335
e-value: 5.1E-8
score: 33.3
coord: 103..155
e-value: 5.9E-13
score: 49.1
coord: 50..100
e-value: 1.3E-9
score: 38.4
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 145..155
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00625RCC1_1coord: 110..121
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 159..217
score: 14.042
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 218..280
score: 10.886
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 51..103
score: 16.534
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 340..392
score: 15.971
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 282..339
score: 13.077
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 104..158
score: 14.725
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 393..448
score: 13.66
NoneNo IPR availableGENE3D2.130.10.30coord: 44..188
e-value: 2.3E-38
score: 131.4
coord: 189..453
e-value: 1.3E-62
score: 211.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 44..447

Blast
[Close]
BLAST of TCONS_00052166-protein vs. Swiss-Prot (Human)
Match: RCC1 (Regulator of chromosome condensation OS=Homo sapiens GN=RCC1 PE=1 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 4.622e-125
Identity = 201/410 (49.02%), Postives = 273/410 (66.59%), Query Frame = 0 
Query:   48 TKSGKVLAFGQGDVGQLGLGDEVLERKRPALVKEVDDIKFIQSVCGGMHTVILTEDGEVYTFGCNDEGALGRATSGTDDEEYYARKVALPDGVKIIQVSAGDSHTAALSDKGEVYAWGAYRDASGQMGLTAASLGKKNEIRKIYPKGDEIEDPAIKVASGNDHTVILTKDGSIYTNGTGEQGQLGRLKECFGHRGGRRGLDFLLSPQLVRFRRK-----VRFSDIFTGSFCTFALSSDTNDVYAWGLNNYGQLGSGTNDNYFNPKVIKPLTEIRNQSKSNQMVIQGGQHHSIMVDGEGIVYSFGRAEYGRLGLGTDAKETAVPVKVPKLADKKVKDVACGESVSYAVTEKGQLYSWGFGTTLQLGVGDDDDIYEPELVKSKNLDPETDEVLTISGGGQHVSLVVCKKENT 452
            T+ G VL  GQGDVGQLGLG+ V+ERK+PALV   +D+  +Q+  GGMHTV L++ G+VY+FGCNDEGALGR TS  +  E    KV L +  K++QVSAGDSHTAAL+D G V+ WG++RD +G +GL       +   + + P   +++ P +KVASGNDH V+LT DG +YT G GEQGQLGR+ E F +RGGR+GL+ LL P+ V  + +     VRF D F G++ TFA+S + + VY +GL+NY QLG+   ++ F P   + LT  +N +KS  +   GGQHH++ +D EG  YS GRAEYGRLGLG  A+E ++P  + +L    V  VACG SV YAVT+ G++++WG GT  QLG G D+D + P  +  K L  E   VL++S GGQH  L+V  KE +
Sbjct:   32 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV--VQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTS-VEGSEMVPGKVELQE--KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLL------EPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH-VYGFGLSNYHQLGTPGTESCFIP---QNLTSFKNSTKS-WVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQL--ENRVVLSVSSGGQHTVLLVKDKEQS 421
The following BLAST results are available for this feature:
BLAST of TCONS_00052166-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RCC14.622e-12549.02Regulator of chromosome condensation OS=Homo sapie... [more]
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