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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052166 ID=TCONS_00052166|Name=TCONS_00052166|organism=Clytia hemisphaerica|type=transcript|length=2788bp
ATAATTTTTAGCCTCACAATTTCGGGGTAGGCCTGGGCAGgctgaagact
tcaaaaatggtccgatttggttaaaattggttacaattttacaattggcc
tacaaatgatttaaaaacactgaagttgagccccaGTGCGGTTCTAGCAC
GTTCAACAGTAATTGATATTTCCTAAATTAATACAGACagaatataaata
aaacaatgcCAAGAAAAGGAGACAAACGAAAAAGGCGATCCGATGATGAA
TCTTCATCAGGagcaagcacttcaaaaaatgctaaaaataccAAGAAAGA
AGAGACTCCAGCCATAGAAGAGGTGACAACCATCCCTGCGGTGTTCACCA
AATCTGGCAAAGTATTAGCTTTTGGACAAGGAGATGTTGGACAGCTTGGT
CTCGGTGATGAGGTTTTGGAGAGGAAACGACCAGCTCTGGTTAAAGAAGT
GGATGACATCAAATTTATACAATCAGTATGCGGTGGAATGCATACTGTTA
TCTTGACTGAGGATGGAGAGGTCTACACTTTTGGGTGTAATGATGAAGGG
GCACTGGGACGAGCCACCAGCGGTACAGATGATGAAGAATATTATGCAAG
AAAAGTTGCTCTCCCCGACGGTGTCAAAATTATACAAGTTTCTGCTGGTG
ACAGTCATACTGCTGCCTTGTCAGATAAAGGAGAAGTTTATGCTTGGGGA
GCATACAggGATGCCAGTGGTCAAATGGGTCTAACAGCAGCTTCTCTTGG
CAAGAAGAACGAGATTAGAAAGATATACCCAAAAGGTGATGAAATAGAGG
ACCCAGCGATCAAAGTAGCTTCTGGTAACGATCATACTGTCATTCTAACA
AAAGATGGTTCGATATACACGAATGGAACCGGTGAACAAGGCCAATTGGG
TAGATTAAAGGAATGTTTTGGACATCGTGGTGGTCGACGTggtttagatt
ttcttttatcGCCACAATTGGTTCGTTTTCGACGGAAAGTGAGATTCTCA
GACATTTTCACTGGCAGCTTTTGCACTTTCGCCCTAAGTAGCGACACAAA
CGATGTCTACGCTTGGGGTCTGAATAATTATGGACAGTTAGGCTCTGGCA
CAAATGATAATTATTTCAACCCGAAAGTTATAAAGCCTTTAACGGAAATA
CGGAACCAATCGAAGTCCAATCAGATGGTGATCCAAGGTGGTCAACACca
ttccataatggtggatggAGAAGGTATTGTTTATAGTTTTGGTCGCGCAG
AATATGGTAGACTAGGACTTGGAACAGATGCAAAGGAAACTGCGGTACCT
GTCAAAGTTCCAAAACTAGCAGATAAAAAAGTCAAAGATGTTGCGTGTGG
GGAATCAGTTAGTTATGCTGTAACCGAGAAAGGCCAATTATATTCATGGG
GTTTTGGAACCACACTGCAGTTAGGTGTTGGCGATGATGATGATATTTAC
GAGCCAGAGCTGGtcaaatcgaaaaatcttgaTCCTGAAACCGATGAAGT
TTTAACCATATCTGGTGGTGGTCAGCACGTTTCCTTAGTTGtctgtaaaa
aagaaaacacggCGAATGGACATGAAAGTTAACTAttgtttttttaacct
ttttggtATTACGTGAAAATGGTGGAGCAAGATCTTCAATGCAACCTCGA
CTGCGACGAGTTTTTGGCTATACGTTTATCATCTTGAATAGCGGGTTAAA
AAGTTGAGATCTTCTGAATACTGTAATGTCTTCAAAGATGGAGACAGATG
GAGTATCTATCTTTATCGCTTTTAAATCTGTATAGGGTAATCGCGTCATC
AGATGTTGATATTCTTTCACATTTTCTACTATTGTAAGGAAAGCAAGGAA
CTTTTCCATTGACATGCATCATTATTTATACTGATacattttaaaagaat
tctCTAGTATATTGAGGATGAATTTTAGGTTAACACtattttaaacttaa
aaaattcaATGACATTTGTTTTCATGATATAACAATCATTATGCGAATTC
TCTTGGAGTAAAGTTAAGACTTttgaaagattcgaattttGCAAGGGTTT
CTactattttttttcaaggtgGTTTTTAACAGAAGTGATTTTATCTTTAC
TTGAATAAAGTATTATTAATTGTATGATGAGTAATGaaagaaataattaa
ttttgttcttctttttaatCATGTTATATAGTAACAGTCTTTGTAATCTC
TTTAAGGAATTTatgtcactgacctttataaactcTGGACCAAACTATAT
CCGCCATATTTGATCGGAGATTTTTTGACAGTGGTACCcgcaaaaaaaac
attatagTGTCAAAACTTTGAGGTGCTACCTCACTTGTATGCAAAcgaag
tagatctagcgctctcaaTGCGGGTACCACTTTGAAAAAACTTCCGATCG
AAAGATCTTGTTTGACCGGGATCGAGAAACTGCCTCCAGGGTCTATATAA
AGCTCTGTGATTTTGTGATGTACATTATTTGTCCATCTATTCTTTCGATA
CATGAAAGGTATTCGACTTTTTAGGGAGTTCTGTACAGCCATTCTCTTTT
CCATACCCTGGATAAAACTTTATCCGCCATCTTTCATCAGAGTTTTTTGA
GAAGTGGTTCAATTAATActtcaatgaaataattttccctttgaaaaata
tttttagaccCACATCGAGTACTTTAATGGGGAATTTGGAAAGGCttaat
atttctaaacaaaactcaaaaaatgtcaaataaatactttttgaatgttt
actggcatcaaagagaCGCtcataatgcgtatttcaac Run BLAST on NCBI protein sequence of TCONS_00052166-protein >TCONS_00052166-protein ID=TCONS_00052166-protein|Name=TCONS_00052166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MPRKGDKRKRRSDDESSSGASTSKNAKNTKKEETPAIEEVTTIPAVFTKS
GKVLAFGQGDVGQLGLGDEVLERKRPALVKEVDDIKFIQSVCGGMHTVIL
TEDGEVYTFGCNDEGALGRATSGTDDEEYYARKVALPDGVKIIQVSAGDS
HTAALSDKGEVYAWGAYRDASGQMGLTAASLGKKNEIRKIYPKGDEIEDP
AIKVASGNDHTVILTKDGSIYTNGTGEQGQLGRLKECFGHRGGRRGLDFL
LSPQLVRFRRKVRFSDIFTGSFCTFALSSDTNDVYAWGLNNYGQLGSGTN
DNYFNPKVIKPLTEIRNQSKSNQMVIQGGQHHSIMVDGEGIVYSFGRAEY
GRLGLGTDAKETAVPVKVPKLADKKVKDVACGESVSYAVTEKGQLYSWGF
GTTLQLGVGDDDDIYEPELVKSKNLDPETDEVLTISGGGQHVSLVVCKKE
NTANGHES Run BLAST on NCBI transcript from alignment at scaffold_211:101558..106268- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052166 ID=TCONS_00052166|Name=TCONS_00052166|organism=Clytia hemisphaerica|type=transcript|length=4711bp|location=Sequence derived from alignment at scaffold_211:101558..106268- (Clytia hemisphaerica)
ATAATTTTTAGCCTCACAATTTCGGGGTAGGCCTGGGCAGGCTGAAGACT
TCAAAAATGGTCCGATTTGGTTAAAATTGGTTACAATTTTACAATTGGCC
TACAAATGATTTAAAAACACTGAAGTTGAGCCCCAGTGCGGTTCTAGCAC
GTTCAACAGTAATTGATATTTCCTAAATTAATACAGACAGAATATAAATA
AAACAATGCCAAGAAAAGGAGACAAACGAAAAAGGCGATCCGATGATGAA
TCTTCATCAGGAGCAAGCACTTCAAAAAATGCTAAAAATACCAAGAAAGG
TAAGAAAGTGATTGAAAAATGACCTGATTACAGTGTTCAAACTTCTATCG
TCTCAGAAGGATTTCTTTCTTAGTGAAGGAAATAAAGAGGTATTTCCGTT
TCAAAATTGTGTATAATTCATCAAAATTTCAAGATTATGTGCTAAATTGC
TACCTTAAAGGAAGAAATTTTGGCGGGAATTTAATTTGGCGTTTAATGAA
AAATTTATCCTTAAAATGGCGTGAAAACAGCTAAAAAAATGCAAAGACAC
CTTAAAAGAGATCATATTTTCAAAAAGTTTAATTTGGCGGAAGGCGTAAA
AAAGAAATTTTAGCGGGAACTTAATTTGGCGGATCCTGGCCAAATCTGTC
AAATCTGCCAAATCCGCCAAATTTTCTTTCCGCCAAAATTTCTTCCTTTA
AGGTATGTAAAATCTGTTTTCTGTCTCAGACCAATAACCTCGATTTGATC
ACTGTCATTACCACTAATTGTTTAACCCATTTATCCTGGGGTTACTTTTG
CGGCTTACAATCACCAATGGATTTGATTACATTTTCAAGGATTTCATAAG
GGAAAGTAACTCCACTCTTTAAAATTTCACTCGCATTTTTATTTATGATT
TGGAGTATTGACAGTGGAGGCTAGTATAAAAATGGAATATAATTCGTATT
ATAATTTTGTGGTTTTTTTATGTTAAGTTCTTTATGTTGAACAAAAAATG
ACTGGTATTGGTAATAAAATCACTGTTTTAAAATAACTGTCTCCTTTCGA
TTCATCTTGAAACATTTTTGACATTATCAAGTTCAATCAAGTTTTATACT
CTTTTAAAATATCTTAAAATATTAAAAAAATCTTATAGCTCTTGGATTAT
GATTATTCCCATTTACTTTTCACAATCATCTGCCATTGCTTTAAATTAGT
TTTCTTTATATTTGAATTATACTGAATTATATATAGAAAAAAAGTAAAAC
TGTGATATCATATACCGCTCTGTAAATTACAGTATTGAGTACTGTTGAAT
TTTTTTAAAGTCAGTTGTACAATTATATTTGAATTATTTGATACTTCTTA
CTTCTCGCAGAAGAGACTCCAGCCATAGAAGAGGTGACAACCATCCCTGC
GGTGTTCACCAAATCTGGCAAAGTATTAGCTTTTGGACAAGGAGATGTTG
GACAGCTTGGTCTCGGTGATGAGGTTTTGGAGAGGAAACGACCAGCTCTG
GTTAAAGAAGTGGATGACATCAAATTTATACAATCAGTATGCGGTGGAAT
GCATACTGTTATCTTGACTGAGGATGGAGAGGTTTGTGTTTTGTAGTAAC
TTGTTCAAGTCCTTAACATGATCCTTTCTTATTTGTCTAATACATTCCAT
AATGGACACCCCTTAAAAACTAGGGGGTTCGACTTTTTGGGAAATCTTTT
TGGAAAAAAGGATGGTTTGATTTTGGGTAACGTTTGGAAAAATATTTTTC
CGTTTGTCAACCTTGTTTGATTGATTTTTGACATTTTCTTAAAGCAGCAG
AAAACTCTATAGTTTGATTGATTTTTAGATATCGAGGCAGTATGGGAGTT
GAGCATATAGGAGTTAAGCATATATTTTTGAGGGGGCAGTTGAAACCCCT
GTACCCACTATAAATTCGTATCTTTAACCCATCATGTATCTTGGGAGAGG
GTCTCGAGGCTTTGGTGTATATTTTGGCATGATTATTGACGTTTTGACAT
AGAAAATGATCTCTTTTTAGTCGTGCCCTTTCTGATAGCGATGGATTTAT
ATACAAAACTTAGTACATTCAATTCTATTATAGGTCTACACTTTTGGGTG
TAATGATGAAGGGGCACTGGGACGAGCCACCAGCGGTACAGATGATGAAG
AATATTATGCAAGAAAAGTTGCTCTCCCCGACGGTGTCAAAATTATACAA
GTTTCTGCTGGTGACAGTCATACTGCTGCCTTGTCAGATAAAGGAGAAGT
TTATGCTTGGGGAGCATACAGGGTAAGAAATTTTTTTTAGACCTAGCTGG
AGCCCATAGAAATTCTTTGATTTTTTGCACTAAGATACAAAATGGTATAT
AATGCCCAAAATGTGACTGTCCCGGAAATATTTTCAATTATTCAATTTTT
ACAATCAGGTAGGCCCATACAAGTATCACTTGTTTTTGCACAGTTTTGTG
TATTTTTCCTTAGGTTAATTTAGGAAGTATAACTAATTCGTTAAAGTGTT
TATTCATATCTTTAGTTTCAATTGAAAATTCCTACATATAGTATGCTGTG
ACCCCTGCTCCGTTATATTGAGGCCTTTTTTATTGTGGGGCCTTTTAAAA
AACATTATCATCTTTAATTTTTCTTTCTCTAGGATGCCAGTGGTCAAATG
GGTCTAACAGCAGCTTCTCTTGGCAAGAAGAACGAGATTAGAAAGATATA
CCCAAAAGGTGATGAAATAGAGGACCCAGCGATCAAAGTAGCTTCTGGTA
ACGATCATACTGTCATTCTAACAAAAGATGGTTCGATATACACGAATGGA
ACCGGTGAACAAGGCCAATTGGGTAGATTAAAGGAATGTTTTGGACATCG
TGGTGGTCGACGTGGTTTAGATTTTCTTTTATCGCCACAATTGGTTCGTT
TTCGACGGAAAGTGAGATTCTCAGACATTTTCACTGGCAGCTTTTGCACT
TTCGCCCTAAGTAGCGACACAAACGATGTCTACGCTTGGGGTCTGAATAA
TTATGGACAGTTAGGCTCTGGCACAAATGATAATTATTTCAACCCGAAAG
TTATAAAGCCTTTAACGGAAATACGGAACCAATCGAAGTCCAATCAGATG
GTGATCCAAGGTGGTCAACACCATTCCATAATGGTGGATGGAGAAGGTAT
TGTTTATAGTTTTGGTCGCGCAGAATATGGTAGACTAGGACTTGGAACAG
ATGCAAAGGAAACTGCGGTACCTGTCAAAGTTCCAAAACTAGCAGATAAA
AAAGTCAAAGATGTTGCGTGTGGGGAATCAGTTAGTTATGCTGTAACCGA
GAAAGGCCAATTATATTCATGGGGTTTTGGAACCACACTGCAGTTAGGTG
TTGGCGATGATGATGATATTTACGAGCCAGAGCTGGTCAAATCGAAAAAT
CTTGATCCTGAAACCGATGAAGTTTTAACCATATCTGGTGGTGGTCAGCA
CGTTTCCTTAGTTGTCTGTAAAAAAGAAAACACGGCGAATGGACATGAAA
GTTAACTATTGTTTTTTTAACCTTTTTGGTATTACGTGAAAATGGTGGAG
CAAGATCTTCAATGCAACCTCGACTGCGACGAGTTTTTGGCTATACGTTT
ATCATCTTGAATAGCGGGTTAAAAAGTTGAGATCTTCTGAATACTGTAAT
GTCTTCAAAGATGGAGACAGATGGAGTATCTATCTTTATCGCTTTTAAAT
CTGTATAGGGTAATCGCGTCATCAGATGTTGATATTCTTTCACATTTTCT
ACTATTGTAAGGAAAGCAAGGAACTTTTCCATTGACATGCATCATTATTT
ATACTGATACATTTTAAAAGAATTCTCTAGTATATTGAGGATGAATTTTA
GGTTAACACTATTTTAAACTTAAAAAATTCAATGACATTTGTTTTCATGA
TATAACAATCATTATGCGAATTCTCTTGGAGTAAAGTTAAGACTTTTGAA
AGATTCGAATTTTGCAAGGGTTTCTACTATTTTTTTTCAAGGTGGTTTTT
AACAGAAGTGATTTTATCTTTACTTGAATAAAGTATTATTAATTGTATGA
TGAGTAATGAAAGAAATAATTAATTTTGTTCTTCTTTTTAATCATGTTAT
ATAGTAACAGTCTTTGTAATCTCTTTAAGGAATTTATGTCACTGACCTTT
ATAAACTCTGGACCAAACTATATCCGCCATATTTGATCGGAGATTTTTTG
ACAGTGGTACCCGCAAAAAAAACATTATAGTGTCAAAACTTTGAGGTGCT
ACCTCACTTGTATGCAAACGAAGTAGATCTAGCGCTCTCAATGCGGGTAC
CACTTTGAAAAAACTTCCGATCGAAAGATCTTGTTTGACCGGGATCGAGA
AACTGCCTCCAGGGTCTATATAAAGCTCTGTGATTTTGTGATGTACATTA
TTTGTCCATCTATTCTTTCGATACATGAAAGGTATTCGACTTTTTAGGGA
GTTCTGTACAGCCATTCTCTTTTCCATACCCTGGATAAAACTTTATCCGC
CATCTTTCATCAGAGTTTTTTGAGAAGTGGTTCAATTAATACTTCAATGA
AATAATTTTCCCTTTGAAAAATATTTTTAGACCCACATCGAGTACTTTAA
TGGGGAATTTGGAAAGGCTTAATATTTCTAAACAAAACTCAAAAAATGTC
AAATAAATACTTTTTGAATGTTTACTGGCATCAAAGAGACGCTCATAATG
CGTATTTCAAC Coding sequence (CDS) from alignment at scaffold_211:101558..106268- >TCONS_00052166 ID=TCONS_00052166|Name=TCONS_00052166|organism=Clytia hemisphaerica|type=CDS|length=5508bp|location=Sequence derived from alignment at scaffold_211:101558..106268- (Clytia hemisphaerica)
GATGCCAGTGGTCAAATGGGTCTAACAGCAGCTTCTCTTGGCAAGAAGAA
CGAGATTAGAAAGATATACCCAAAAGGTGATGAAATAGAGGACCCAGCGA
TCAAAGTAGCTTCTGGTAACGATCATACTGTCATTCTAACAAAAGATGGT
TCGATATACACGAATGGAACCGGTGAACAAGGCCAATTGGGTAGATTAAA
GGAATGTTTTGGACATCGTGGTGGTCGACGTGGTTTAGATTTTCTTTTAT
CGCCACAATTGGTTCGTTTTCGACGGAAAGTGAGATTCTCAGACATTTTC
ACTGGCAGCTTTTGCACTTTCGCCCTAAGTAGCGACACAAACGATGTCTA
CGCTTGGGGTCTGAATAATTATGGACAGTTAGGCTCTGGCACAAATGATA
ATTATTTCAACCCGAAAGTTATAAAGCCTTTAACGGAAATACGGAACCAA
TCGAAGTCCAATCAGATGGTGATCCAAGGTGGTCAACACCATTCCATAAT
GGTGGATGGAGAAGGTATTGTTTATAGTTTTGGTCGCGCAGAATATGGTA
GACTAGGACTTGGAACAGATGCAAAGGAAACTGCGGTACCTGTCAAAGTT
CCAAAACTAGCAGATAAAAAAGTCAAAGATGTTGCGTGTGGGGAATCAGT
TAGTTATGCTGTAACCGAGAAAGGCCAATTATATTCATGGGGTTTTGGAA
CCACACTGCAGTTAGGTGTTGGCGATGATGATGATATTTACGAGCCAGAG
CTGGTCAAATCGAAAAATCTTGATCCTGAAACCGATGAAGTTTTAACCAT
ATCTGGTGGTGGTCAGCACGTTTCCTTAGTTGTCTGTAAAAAAGAAAACA
CGGCGAATGGACATGAAAGTTAAGTCTACACTTTTGGGTGTAATGATGAA
GGGGCACTGGGACGAGCCACCAGCGGTACAGATGATGAAGAATATTATGC
AAGAAAAGTTGCTCTCCCCGACGGTGTCAAAATTATACAAGTTTCTGCTG
GTGACAGTCATACTGCTGCCTTGTCAGATAAAGGAGAAGTTTATGCTTGG
GGAGCATACAGGAAGAGACTCCAGCCATAGAAGAGGTGACAACCATCCCT
GCGGTGTTCACCAAATCTGGCAAAGTATTAGCTTTTGGACAAGGAGATGT
TGGACAGCTTGGTCTCGGTGATGAGGTTTTGGAGAGGAAACGACCAGCTC
TGGTTAAAGAAGTGGATGACATCAAATTTATACAATCAGTATGCGGTGGA
ATGCATACTGTTATCTTGACTGAGGATGGAGAGATGCCAAGAAAAGGAGA
CAAACGAAAAAGGCGATCCGATGATGAATCTTCATCAGGAGCAAGCACTT
CAAAAAATGCTAAAAATACCAAGAAAGGATGCCAGTGGTCAAATGGGTCT
AACAGCAGCTTCTCTTGGCAAGAAGAACGAGATTAGAAAGATATACCCAA
AAGGTGATGAAATAGAGGACCCAGCGATCAAAGTAGCTTCTGGTAACGAT
CATACTGTCATTCTAACAAAAGATGGTTCGATATACACGAATGGAACCGG
TGAACAAGGCCAATTGGGTAGATTAAAGGAATGTTTTGGACATCGTGGTG
GTCGACGTGGTTTAGATTTTCTTTTATCGCCACAATTGGTTCGTTTTCGA
CGGAAAGTGAGATTCTCAGACATTTTCACTGGCAGCTTTTGCACTTTCGC
CCTAAGTAGCGACACAAACGATGTCTACGCTTGGGGTCTGAATAATTATG
GACAGTTAGGCTCTGGCACAAATGATAATTATTTCAACCCGAAAGTTATA
AAGCCTTTAACGGAAATACGGAACCAATCGAAGTCCAATCAGATGGTGAT
CCAAGGTGGTCAACACCATTCCATAATGGTGGATGGAGAAGGTATTGTTT
ATAGTTTTGGTCGCGCAGAATATGGTAGACTAGGACTTGGAACAGATGCA
AAGGAAACTGCGGTACCTGTCAAAGTTCCAAAACTAGCAGATAAAAAAGT
CAAAGATGTTGCGTGTGGGGAATCAGTTAGTTATGCTGTAACCGAGAAAG
GCCAATTATATTCATGGGGTTTTGGAACCACACTGCAGTTAGGTGTTGGC
GATGATGATGATATTTACGAGCCAGAGCTGGTCAAATCGAAAAATCTTGA
TCCTGAAACCGATGAAGTTTTAACCATATCTGGTGGTGGTCAGCACGTTT
CCTTAGTTGTCTGTAAAAAAGAAAACACGGCGAATGGACATGAAAGTTAA
GTCTACACTTTTGGGTGTAATGATGAAGGGGCACTGGGACGAGCCACCAG
CGGTACAGATGATGAAGAATATTATGCAAGAAAAGTTGCTCTCCCCGACG
GTGTCAAAATTATACAAGTTTCTGCTGGTGACAGTCATACTGCTGCCTTG
TCAGATAAAGGAGAAGTTTATGCTTGGGGAGCATACAGGAAGAGACTCCA
GCCATAGAAGAGGTGACAACCATCCCTGCGGTGTTCACCAAATCTGGCAA
AGTATTAGCTTTTGGACAAGGAGATGTTGGACAGCTTGGTCTCGGTGATG
AGGTTTTGGAGAGGAAACGACCAGCTCTGGTTAAAGAAGTGGATGACATC
AAATTTATACAATCAGTATGCGGTGGAATGCATACTGTTATCTTGACTGA
GGATGGAGAGATGCCAAGAAAAGGAGACAAACGAAAAAGGCGATCCGATG
ATGAATCTTCATCAGGAGCAAGCACTTCAAAAAATGCTAAAAATACCAAG
AAAGGATGCCAGTGGTCAAATGGGTCTAACAGCAGCTTCTCTTGGCAAGA
AGAACGAGATTAGAAAGATATACCCAAAAGGTGATGAAATAGAGGACCCA
GCGATCAAAGTAGCTTCTGGTAACGATCATACTGTCATTCTAACAAAAGA
TGGTTCGATATACACGAATGGAACCGGTGAACAAGGCCAATTGGGTAGAT
TAAAGGAATGTTTTGGACATCGTGGTGGTCGACGTGGTTTAGATTTTCTT
TTATCGCCACAATTGGTTCGTTTTCGACGGAAAGTGAGATTCTCAGACAT
TTTCACTGGCAGCTTTTGCACTTTCGCCCTAAGTAGCGACACAAACGATG
TCTACGCTTGGGGTCTGAATAATTATGGACAGTTAGGCTCTGGCACAAAT
GATAATTATTTCAACCCGAAAGTTATAAAGCCTTTAACGGAAATACGGAA
CCAATCGAAGTCCAATCAGATGGTGATCCAAGGTGGTCAACACCATTCCA
TAATGGTGGATGGAGAAGGTATTGTTTATAGTTTTGGTCGCGCAGAATAT
GGTAGACTAGGACTTGGAACAGATGCAAAGGAAACTGCGGTACCTGTCAA
AGTTCCAAAACTAGCAGATAAAAAAGTCAAAGATGTTGCGTGTGGGGAAT
CAGTTAGTTATGCTGTAACCGAGAAAGGCCAATTATATTCATGGGGTTTT
GGAACCACACTGCAGTTAGGTGTTGGCGATGATGATGATATTTACGAGCC
AGAGCTGGTCAAATCGAAAAATCTTGATCCTGAAACCGATGAAGTTTTAA
CCATATCTGGTGGTGGTCAGCACGTTTCCTTAGTTGTCTGTAAAAAAGAA
AACACGGCGAATGGACATGAAAGTTAAGTCTACACTTTTGGGTGTAATGA
TGAAGGGGCACTGGGACGAGCCACCAGCGGTACAGATGATGAAGAATATT
ATGCAAGAAAAGTTGCTCTCCCCGACGGTGTCAAAATTATACAAGTTTCT
GCTGGTGACAGTCATACTGCTGCCTTGTCAGATAAAGGAGAAGTTTATGC
TTGGGGAGCATACAGGAAGAGACTCCAGCCATAGAAGAGGTGACAACCAT
CCCTGCGGTGTTCACCAAATCTGGCAAAGTATTAGCTTTTGGACAAGGAG
ATGTTGGACAGCTTGGTCTCGGTGATGAGGTTTTGGAGAGGAAACGACCA
GCTCTGGTTAAAGAAGTGGATGACATCAAATTTATACAATCAGTATGCGG
TGGAATGCATACTGTTATCTTGACTGAGGATGGAGAGATGCCAAGAAAAG
GAGACAAACGAAAAAGGCGATCCGATGATGAATCTTCATCAGGAGCAAGC
ACTTCAAAAAATGCTAAAAATACCAAGAAAGGATGCCAGTGGTCAAATGG
GTCTAACAGCAGCTTCTCTTGGCAAGAAGAACGAGATTAGAAAGATATAC
CCAAAAGGTGATGAAATAGAGGACCCAGCGATCAAAGTAGCTTCTGGTAA
CGATCATACTGTCATTCTAACAAAAGATGGTTCGATATACACGAATGGAA
CCGGTGAACAAGGCCAATTGGGTAGATTAAAGGAATGTTTTGGACATCGT
GGTGGTCGACGTGGTTTAGATTTTCTTTTATCGCCACAATTGGTTCGTTT
TCGACGGAAAGTGAGATTCTCAGACATTTTCACTGGCAGCTTTTGCACTT
TCGCCCTAAGTAGCGACACAAACGATGTCTACGCTTGGGGTCTGAATAAT
TATGGACAGTTAGGCTCTGGCACAAATGATAATTATTTCAACCCGAAAGT
TATAAAGCCTTTAACGGAAATACGGAACCAATCGAAGTCCAATCAGATGG
TGATCCAAGGTGGTCAACACCATTCCATAATGGTGGATGGAGAAGGTATT
GTTTATAGTTTTGGTCGCGCAGAATATGGTAGACTAGGACTTGGAACAGA
TGCAAAGGAAACTGCGGTACCTGTCAAAGTTCCAAAACTAGCAGATAAAA
AAGTCAAAGATGTTGCGTGTGGGGAATCAGTTAGTTATGCTGTAACCGAG
AAAGGCCAATTATATTCATGGGGTTTTGGAACCACACTGCAGTTAGGTGT
TGGCGATGATGATGATATTTACGAGCCAGAGCTGGTCAAATCGAAAAATC
TTGATCCTGAAACCGATGAAGTTTTAACCATATCTGGTGGTGGTCAGCAC
GTTTCCTTAGTTGTCTGTAAAAAAGAAAACACGGCGAATGGACATGAAAG
TTAAGTCTACACTTTTGGGTGTAATGATGAAGGGGCACTGGGACGAGCCA
CCAGCGGTACAGATGATGAAGAATATTATGCAAGAAAAGTTGCTCTCCCC
GACGGTGTCAAAATTATACAAGTTTCTGCTGGTGACAGTCATACTGCTGC
CTTGTCAGATAAAGGAGAAGTTTATGCTTGGGGAGCATACAGGAAGAGAC
TCCAGCCATAGAAGAGGTGACAACCATCCCTGCGGTGTTCACCAAATCTG
GCAAAGTATTAGCTTTTGGACAAGGAGATGTTGGACAGCTTGGTCTCGGT
GATGAGGTTTTGGAGAGGAAACGACCAGCTCTGGTTAAAGAAGTGGATGA
CATCAAATTTATACAATCAGTATGCGGTGGAATGCATACTGTTATCTTGA
CTGAGGATGGAGAGATGCCAAGAAAAGGAGACAAACGAAAAAGGCGATCC
GATGATGAATCTTCATCAGGAGCAAGCACTTCAAAAAATGCTAAAAATAC
CAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052166-exon-scaffold_211-1575043694:105970..106268 | TCONS_00052166-exon-scaffold_211-1575043694:105970..106268 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1575043694:104688..104908 | TCONS_00052166-exon-scaffold_211-1575043694:104688..104908 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1575043694:103997..104185 | TCONS_00052166-exon-scaffold_211-1575043694:103997..104185 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1575043694:101558..103636 | TCONS_00052166-exon-scaffold_211-1575043694:101558..103636 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1510915933:105970..106268 | TCONS_00052166-exon-scaffold_211-1510915933:105970..106268 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1510915933:104688..104908 | TCONS_00052166-exon-scaffold_211-1510915933:104688..104908 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1510915933:103997..104185 | TCONS_00052166-exon-scaffold_211-1510915933:103997..104185 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1510915933:101558..103636 | TCONS_00052166-exon-scaffold_211-1510915933:101558..103636 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1491911889:105970..106268 | TCONS_00052166-exon-scaffold_211-1491911889:105970..106268 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1491911889:104688..104908 | TCONS_00052166-exon-scaffold_211-1491911889:104688..104908 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1491911889:103997..104185 | TCONS_00052166-exon-scaffold_211-1491911889:103997..104185 | Clytia hemisphaerica | exon |
| TCONS_00052166-exon-scaffold_211-1491911889:101558..103636 | TCONS_00052166-exon-scaffold_211-1491911889:101558..103636 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_211 | supercontig | scaffold_211:101558..106268 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052166 vs. Swiss-Prot (Human)
Match: RCC1 (Regulator of chromosome condensation OS=Homo sapiens GN=RCC1 PE=1 SV=1) HSP 1 Score: 336.265 bits (861), Expect = 4.739e-105 Identity = 184/385 (47.79%), Postives = 253/385 (65.71%), Query Frame = 2
Query: 422 RKRPALVKEVDDIKFIQSVCGGMHTVILTEDGEVYTFGCNDEGALGRATSGTDDEEYYARKVALPDGVKIIQVSAGDSHTAALSDKGEVYAWGAYRDASGQMGLTAASLGKKNEIRKIYPKGDEIEDPAIKVASGNDHTVILTKDGSIYTNGTGEQGQLGRLKECFGHRGGRRGLDFLLSPQLVRFRRK-----VRFSDIFTGSFCTFALSSDTNDVYAWGLNNYGQLGSGTNDNYFNPKVIKPLTEIRNQSKSNQMVIQGGQHHSIMVDGEGIVYSFGRAEYGRLGLGTDAKETAVPVKVPKLADKKVKDVACGESVSYAVTEKGQLYSWGFGTTLQLGVGDDDDIYEPELVKSKNLDPETDEVLTISGGGQHVSLVVCKKENT 1561
RK+PALV +D+ +Q+ GGMHTV L++ G+VY+FGCNDEGALGR TS + E KV L + K++QVSAGDSHTAAL+D G V+ WG++RD +G +GL + + + P +++ P +KVASGNDH V+LT DG +YT G GEQGQLGR+ E F +RGGR+GL+ LL P+ V + + VRF D F G++ TFA+S + + VY +GL+NY QLG+ ++ F P + LT +N +KS + GGQHH++ +D EG YS GRAEYGRLGLG A+E ++P + +L V VACG SV YAVT+ G++++WG GT QLG G D+D + P + K L E VL++S GGQH L+V KE +
Sbjct: 57 RKKPALVSIPEDV--VQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTS-VEGSEMVPGKVELQE--KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLL------EPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH-VYGFGLSNYHQLGTPGTESCFIP---QNLTSFKNSTKS-WVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQL--ENRVVLSVSSGGQHTVLLVKDKEQS 421
The following BLAST results are available for this feature:
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