TCONS_00052154-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052154-protein
Unique NameTCONS_00052154-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052154-protein ID=TCONS_00052154-protein|Name=TCONS_00052154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
MAELLLVEETLQSNMLFMEGDEEIIGEEEILSTGPLIALQPSSVDHLIDP
NIEVIEEVIDQSYVDDVPVIAQEQEISTDVQPQQQPNNKKRKLKGSKPNF
LKKSKGADGEEGTSEIDVPRKWERKKIQIKTLEGEFSVTVWASEDKTEEQ
DNPEETIEEIQSSIIVEEQKEPEHVEQIEQHQDQKQVEKKKEKPASKVRK
TSESRNKSSDGPKKSKKSSKPKDAAAPAKNITCQHPGCGKVFRDNSAMRK
HLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS
LDFNLRTHVRIHTGDKPYVCPFDSCNKRFAQSTNLKSHILTHAKSNTNSK
GANNASKHQPSIEESIPLESQFSSSITNEDEDEDEDLGDEDLVIQEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033024XLOC_033024Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052154TCONS_00052154Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 231..255
e-value: 0.0013
score: 28.0
coord: 318..342
e-value: 0.0012
score: 28.2
coord: 260..282
e-value: 0.026
score: 23.7
coord: 288..312
e-value: 0.0011
score: 28.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 320..342
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 262..282
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 290..312
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 288..317
score: 15.646
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 231..255
score: 9.993
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 318..347
score: 11.552
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 260..287
score: 16.81
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 231..257
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 268..322
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 312..344
NoneNo IPR availableGENE3D3.30.160.60coord: 309..348
e-value: 2.1E-15
score: 56.0
NoneNo IPR availableGENE3D2.20.28.30coord: 243..270
e-value: 2.2E-13
score: 49.8
NoneNo IPR availableGENE3D3.30.160.60coord: 271..290
e-value: 2.9E-13
score: 49.5
NoneNo IPR availableGENE3D3.30.160.60coord: 291..308
e-value: 2.7E-14
score: 52.4
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 288..312
e-value: 0.0096
score: 16.2
coord: 260..282
e-value: 3.4E-4
score: 20.8
coord: 318..342
e-value: 1.2E-4
score: 22.2
coord: 232..255
e-value: 0.002
score: 18.4
NoneNo IPR availableGENE3D3.30.160.60coord: 191..242
e-value: 9.2E-4
score: 18.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 344..397

Blast
[Close]
BLAST of TCONS_00052154-protein vs. Swiss-Prot (Human)
Match: TYY1 (Transcriptional repressor protein YY1 OS=Homo sapiens GN=YY1 PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 3.738e-92
Identity = 143/234 (61.11%), Postives = 167/234 (71.37%), Query Frame = 0 
Query:  120 RKWERKKIQIKTLEGEFSVTVWASEDKTEEQDNPEETIEEIQSSIIVEEQKEPEHVEQIEQHQDQKQVEKKKEKPASKVRKTSESRNK-----SSDGPKKSKKSSKPKDAAAPAKNITCQHPGCGKVFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDKPYVCPFDSCNKRFAQSTNLKSHILTHAKSNTN 348
            +KWE+K++QIKTLEGEFSVT+W+S++K   +D   ET+ E Q   I+ E   P++ E +            K+ P   +     S  K     +   P+K K+   P+        I C H GC K+FRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD+PYVCPFD CNK+FAQSTNLKSHILTHAK+  N
Sbjct:  203 KKWEQKQVQIKTLEGEFSVTMWSSDEK---KDIDHETVVEEQ---IIGENSPPDYSEYM----------TGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPR-------TIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 413
The following BLAST results are available for this feature:
BLAST of TCONS_00052154-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TYY13.738e-9261.11Transcriptional repressor protein YY1 OS=Homo sapi... [more]
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