TCONS_00027927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027927
Unique NameTCONS_00027927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027927 ID=TCONS_00027927|Name=TCONS_00027927|organism=Clytia hemisphaerica|type=transcript|length=1474bp
AAATGGTCTCAAGTATGTTCTGTTATGTCGTTATTGTTTTGCTAAATATT
GCTTATGAAAACACTTTGAACTGGCATGAAAAGGTTTTAAAACTAAACAC
GAAGTATTTTCCTTGTAAACAAAAGAAGTATCCGCTTTATAAAGCTCTTG
TTTTGATCTCATATAAAATTAGAACAGTTTACACTCGAGTGTTCATATTG
ACCTTTGAGCTTGAGcagtgtttttgagttttagaagCAAAATGAAGTAC
GCGATATTTTTGTGCGTTTTGGTAGCTGGTGCAGTTTTAGCTGACGAAGT
TCCAAATGACAAGTGTATTGACATTTACGATGAATGTGTCAAAGAAACCG
GAGAGGGCCCTGTTGCGCGATTCAAGTGTGGGttgaaatatctaaaatgt
CGTTTGGGAGATGAGAAAGTCAACATTGCTGAACTTTTCGATAGAGAAAA
TGATAAGTGTACCGATGTCTACGATGAATGTGTCAAAGCAACTGGTAAAG
ATCCTGTATCACGATTTAAATGTGGAATCAAATATCTTGAATGTCGCTTT
GGaggaaaaatacattttgaagGTTTTGAAGAAATCTTGAAGAGCAAAAT
CTTCGATAAAGAAAATGACAAGTGCATCGATATTTACGATGAATGTGTCA
AGAAAACTGGTGCAGATCCTGTATCAAGATTCAAGTGTGGAATCAAATAT
CTTGAATGTCGCTTAGGTCGTGACACAGAGGGAAAAGATGAAATCGTCGT
CAActgTGAGAAAACCAAATACACAGATTGTTTCAAACTATCGTTTGGAT
CCATGGGAAAatgtttgaatgaaaaagtcaAATGCACTGAAATTATGTTG
AAACACCAGTTGAAGAGAAAAGTCTTTTGTATGAAAAAGTGCAAAGATGA
TATTTCTGAGTGCATGCAGAACGAAGAAAAGGATATCTGTATCGAAACTG
GAGCCACCTGTCTCTTGGAATGTGGTGAATAGGGAGATTCAGTTccaaat
caatttttcaatcaatACAATATTATATTACAATGTTGAAGAGAATTTAA
GCAtaattttaaagtatatttttaaCATCAAATTTGGATTGTACATCTGT
TGGTATCGAATTATGATCATCACCAAGAAAACTGCTAATATTTACCTATA
AGTATTACTTTgtatcaaattttatttcatatgcTAGATTATGAATAACT
GCATTAAGAAACAATCTTTTTATTAGGaaacaaaaagacaaactgTGTAG
TAAATTTgaaaagcatccaccgaagacCTATTTCAAATACCGTAAGATGA
GGCCCcgccccagcggaccctcaattcacgcaatcacgcaattttttttc
gaaattcaggcattcacgcaaattttcctcgagtttcaagtaataacccg
atttttcagaaatcggaaaatttttgggaaaaatcgggaaaacattgaaa
aatcgGGAAAGCTGCACATAATCG
Run BLAST on NCBI

transcript from alignment at sc0000657:41054..47287-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027927 ID=TCONS_00027927|Name=TCONS_00027927|organism=Clytia hemisphaerica|type=transcript|length=6234bp|location=Sequence derived from alignment at sc0000657:41054..47287- (Clytia hemisphaerica)
AAATGGTCTCAAGTATGTTCTGTTATGTCGTTATTGTTTTGCTAAATATT
GCTTATGAAAACACTTTGAACTGGCATGAAAAGGTTTTAAAACTAAACAC
GAAGTATTTTCCTTGTAAACAAAAGAAGTATCCGCTTTATAAAGCTCTTG
TTTTGATCTCATATAAAATTAGAACAGTTTACACTCGAGTGTTCATATTG
ACCTTTGAGCTTGAGCAGTGTTTTTGAGTTTTAGAAGCAAAATGAAGTAC
GCGATATTTTTGTGCGTTTTGGTAGCTGGTGCAGTTTTAGCTGGTGAGTA
ATGAATTATCTACTTCATCAATCATCTAATGCTAAAAAACTACGACTACC
TTAATAGCGTCTTTGTCATATGATTATACCCGGGTGAAGGGCTACTTGGG
CAAAAAACGATACAGGGATGTGCCGCTGGTCAAGTTACTTTTCAGGGGGA
ATTGGGGAAACAAGTGGAAAATTTTGAGATAAGATTTTAGATTTTCAGTT
CCATTTGGGGTCAGTTTTTTCGATTCTCACAGGTATTTTCAAACCTGAGC
GGTATATCCCGTCAGCTGAAAAAAGCCGTTTTATAGCATTATCAGCGCAT
TCATTATTGGTCCAGCGCGCAGCAGAATGGACCTTTAAAAAGCAACTGAT
CGAAAAGATTTTGTCTTTGTCGGGGCCTGTGCGTGCAATAAATTAACAAG
TTCAGGCTAAACCAACCGCCGACCTAGAATTTTTGCCCCGCCTACCCGCG
CGATGTTTAACCTATGTTTAAATTGAATTGGTAATAGAGTCAAATTTCCC
GGTTAGATTAAAGGGTTGTTTCAGGTAGGGTTAGGGCTAGGGTTGGGGAT
GGGAGTTAACCCCTGGTTAGGGTTTTAGCCCCCGGGTAGAGTTTGGAGTA
AATACCATGTTTATAAGCAACTTTGAACTCCGTAATGCAGTTGTGACTCG
ATGGCCGAGCGGTTAAGGTGCTGGCGTTTTAATCATAGGTGATTTGTATA
TAGTGGGTTCAAATCCCATCAGCGGCAAAAGTTTCGAAATTTCGGGAAAT
GCATCAAAAACTTTCAAAACTTAGCAATACAAAGAAAGTGTCAAAGAATA
GAAGCTCATAGTGGAGGATGGGAAGGAATTTTTTTTGCGTCACTTAAGGA
ACCCGGTACGAACGACATTCGGTTATTGCCACGTCAGCTGGACCTTCACG
CCGCTCCGGCTTCTTGTTTGCTATCAACAAAATCTTCAACTTTATCAAGA
CTTTGAATTCCGAGAAACACTTTCAACTATTTCAAATTTGAAATTTGTAA
GGATAGACGGCCAGAGAGGCAATCAACAATTTTTTTATCTTTTCTTTTAC
GTTTTCTATCTTTTCATTTCAGACGAAGTTCCAAATGACAAGGTAAAATT
GATTTCTTAAACAACAACCAATCTGTTACACAAGCTGTTTCAACGTTTAT
CTAATGTCCATATAAATAATGTTAAATTCGTGTGCTAAGCTGATAACTGA
TAACCAGTAATAACTGATAACATATTTGGGTGGGGTAACCTTATTATTTT
TAATGTGGAATTTTCTAGTTTCTGAGAATGCACTGTAAAAGAGACTGGGA
AAAAAGATCTAAAAACTTGAGAAAGTCGTTTTAGAAGGTTCCCCCTATTT
TTCTCGATGCACAATACACGGGTCCATTTTGGGCAAATTTGCTCGCTTGG
TAAGCGGACCAAATTTACTGCATATTTCTATAGCGGTAATCTTCTTTGTC
ATCCTTTGTATTTCACTTCCAAACTTATTTGTAAGCTACTACAATTGACG
CTCTCTAATTCGATCTTCAAGGCTAATTGGATTTTCATCGAATAAGGGAG
TGTATCGATAAAGAAACGTCGTTTATGAGAGTTTCTTGTTGACAGTGGCT
TTAAATTTCATCGAATAAGGGAGCATATCGAATAATAGAACGTCGAATTA
GAGAGCGTCGACAGTTAAACTACTGGCTAAACAAGAATTCATAAATAAAT
GGTTCCAAACAGGTACTGTCAATATAACTTGTGCTTACTTATTTTGTTTC
CTTAGTGTATTGACATTTACGATGAATGTGTCAAAGAAACCGGAGAGGGC
CCTGTTGCGCGATTCAAGTGTGGGTTGAAATATCTAAAATGTCGTTTGGG
AGATGAGAAAGTCAACATTGCTGAACTTTTCGATAGAGAAAATGATAAGG
TCAGTAACAGTAGATATTTATGAACAGAACGGTCTTTCTCGAACGGAAAT
CTGCACAGCATGCATATTTCTCCGTTGAATTGAATAGACCTTTTCATAAA
TTACGTCACGAACATCACTTGCCTCGTTTTGAAATTATTGCCATAGTGAT
TAACTCCCAGCAGATTTGATTAAAACCACTTTTTATTTATAAAAAAATCA
TTCAGTGTCTCAAGGGACATAATCACCATGGTAATTGTTTGAATACGAGG
CAAGTGATGTTCGTGACGTAATTTATGAAAAGGCCTATTGAGGAAGGAAA
AACACATGTAACAGATTCAAGAATCCTATGAAATAGTCTAATACCCTTTT
AAATCAAGTGGTCAGGAGTCTATATTGGTAAATTTAGACCGTGTATACAC
GTCAATTGGGTTTGAAGGATTAAAGGATTTCATTTTATTTATATACCAGG
GACGGTTTCAATGTTCTTCTTTCTGATGGAAGAAGATTCTATAAATTAAA
AACATTTTGATAATGTTTTCGATATTTGTTTGTTTTCTCAGTGTACCGAT
GTCTACGATGAATGTGTCAAAGCAACTGGTAAAGATCCTGTATCACGATT
TAAATGTGGAATCAAATATCTTGAATGTCGCTTTGGAGGAAAAATACATT
TTGAAGGTTTTGAAGAAATCTTGAAGAGCAAAATCTTCGATAAAGAAAAT
GACAAGGTTTGTTTTATTCTTCTCTGTTTCTTAGTTCCCAATTTGCGTAA
TTTGATTGGTCTATTGAGAATTGTTTGATAAATCAAATTGTGTTAAACGC
CGCCTGAGTCTAGTGATATCCACGGAGTCACGTTTTTCGGCTTTTAGGAA
GAATTTAAAACACCACATAGTCTTTATATCAAGAAAAACTCTTCTGATCG
TATTTTAAAATGACAGTCGAAAATTTTATAGTCTTTAAATGGGCTTAGCG
TCACTAAACATTGCCAAAAGCATCGGTGCAGTCAGAAAATCAGCCACGTG
AAATGTTAAAACCTTATAATTCGATTCTGCGTATTAATAAGAACCATCTG
AGTACCGTGAGTATCAAAATGTATTAATATGACAAATTTTGTTTTTCTCA
GTGTATTGATATTTACGATGAATGTGTTAAAGAAACCGGAGAGGGCCCTG
TTGCACGATTCAAATGTGGAATCAAATATTTGAAATGTCGTTTGGGAGGA
TCATTGGACATCGAAGAACTTACATCATTCTTGCCCAATGACAAGGTATT
AAATGACACCGTTTTAGTTTTGTTTTTAGTGTGTGTAATTCTGTGGCCGG
GTAGAGCATTCGCCTTACAATTTAGCGTTTGTGGGTTCGATTCCCGGTCA
CCGCCAACTCAGCAGATGAGTAGCTTAGATAGGATAATCTGATCTAAGCG
GTAAGTTAGTGGGAACTGAGAGTAGGTGTGGCACTCCAACCTAGCATTTG
ATCTCACAGGTCTAGCGCAAATAGAAAACGGGCCTCCCTCATTCCCTGTT
CCACCGACAGCCACCAGATAAATATACTTACTTAATGCTTGCGATTTTAG
CAAAATCTGCTGTCAATCTGCTATCCAAAATAATTAAAAATTGTGATAAT
CCTCACCTCTCAATATCCAACTATCCCAACTTTATTATGAAGCTGTGAAC
AATTAGAACCAGAAACATCATAGAACAACTTGCTGCAAAGATGTTTAATG
GGGAGTTTATGTGTGTGTTTTTCTGCGACGGAGACGGACTGAGCACGATG
GTAAATCAGTAATTGGGAAGTAATTTTACCGTCCTCGTTTATTCCAAATC
GATATTCAGCCGTTTAGCCGCCCTTAAAAATGCAAACACATAAACTCTCT
ACTTAGAGAGGGACGTCAGAATTTTCCTGACTAGCTGCAATATATTTTTT
TCTTTCTAATATCTACTACAGTGCATCGATATTTACGATGAATGTGTCAA
GAAAACTGGTGCAGATCCTGTATCAAGATTCAAGTGTGGAATCAAATATC
TTGAATGTCGCTTAGGTCGTGACACAGAGGGAAAAGATGAAATCGTCGTC
AACGTGAGTTCAAACTTTAATAGAATAGACCTTATCGGAGTTTTTGATTT
TTCTAAAAAAGCGATGCATTGTGGGATTGTTTCGAGTGTATTACAATAGA
ATTCCCTCGAGGAATTCCTAAGAGATTTCTATTGTAATGGTAATACACTC
GAAACAATCCCACAATACATCGCTTTTTTAGAAAAATCAAAAACTCCGAT
AAGGTCTATTGACGCTTTCTAATTTGACGGTTTCCTATATTTGATACCCA
TCTATTATTCGACAATATTGAAAGTCACCGTCAAACAAGAAAGTCGCATA
AAGGACGCTCTATAATGCAATACGCTCCTTATTTGATGAAATTCCAACCC
AATTCGCCTATTTTTTGGGACTGTACTTTGAGATTTGAAAATTACAAGAT
TTCTTTGAAAGTTTTTTTTTTTTATCTTTTTAGTGTGAGAAAACCAAATA
CACAGATTGTTTCAAACTATCGTTTGGATCCATGGGAAAATGTTTGAATG
AAAAAGTCAAATGCACTGAAATTATGTTGAAACACCAGTTGAAGAGAAAA
GTCTTTTGTATGAAAAAGGTAAGAAATCTTATATTATTTTTAGAAACGAA
AAGAAAAAAAACTAATTTTTCAATATTAAATGAGCTGCGGAGTCGCTATC
CAACATTTTTGTTAGGAATATATGGTAACCAGCCGCGGCGCTTCTTGACG
TGGTACGGTGCTTATTACTGTTAGACGGCGACGTGTTTCGTATAAAGTAA
AATTGTCATAATTTATACGAAATTTTATGACTTGTATAGTGCATAGATTA
GTTTTGAGAATTTTACTTTACATAAGAATTCGCCCACTTTTTGAGACACA
CTGTATGTGCTCCTACTTCATCTTTACTTAAGGGCTCTGACCATAGTAAA
TTTTTCATAATTGCCGTGTATCTTTTACCGAACAATAAAAATTTTTGCGG
AAAATTTTTGTAAATGCTTCTTCATGGTTTTTCATAAATTTTTCATCTGG
ATTTTGCTTAAAAAAACAGTCATAACTTTTGACACATCTTTTTAGAAAAA
TTTTCCGCAAAATTTAAAATAGTTCAATTCTTTGCGGACAATTTGAAAAA
ACTTCGAAACAAAAAGGTTAATTACCCATTAAAACTTAGCACTTTTTATA
AAAGAAGGTGGTGCAACATATTATTAACGTCTTTTTAAAGTTAATAACGT
CATTTCTGCAATAAAATTCTTAATTACTATGAAGGGATTTGATTAAAAAG
CAATTTATAAAGGTAATTCTTTCTGTTAAAAGTGTTAAAGAATCTAAAAC
ATAATTTTCATGTTCAGATACTAAAATCAATTTTCCGACTATGGTCAGAG
CCCTTAAATTCGAAATGTTTCACTATACAAGTCACTCTTTATTTCATAGT
GCAAAGATGATATTTCTGAGTGCATGCAGAACGAAGAAAAGGATATCTGT
ATCGAAACTGGAGCCACCTGTCTCTTGGAATGTGGTGAATAGGGAGATTC
AGTTCCAAATCAATTTTTCAATCAATACAATATTATATTACAATGTTGAA
GAGAATTTAAGCATAATTTTAAAGTATATTTTTAACATCAAATTTGGATT
GTACATCTGTTGGTATCGAATTATGATCATCACCAAGAAAACTGCTAATA
TTTACCTATAAGTATTACTTTGTATCAAATTTTATTTCATATGCTAGATT
ATGAATAACTGCATTAAGAAACAATCTTTTTATTAGGAAACAAAAAGACA
AACTGTGTAGTAAATTTGAAAAGCATCCACCGAAGACCTATTTCAAATAC
CGTAAGATGAGGCCCCGCCCCAGCGGACCCTCAATTCACGCAATCACGCA
ATTTTTTTTCGAAATTCAGGCATTCACGCAAATTTTCCTCGAGTTTCAAG
TAATAACCCGATTTTTCAGAAATCGGAAAATTTTTGGGAAAAATCGGGAA
AACATTGAAAAATCGGGAAAGCTGCACATAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015790XLOC_015790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027927-exon-sc0000657-1575043694:46995..47287TCONS_00027927-exon-sc0000657-1575043694:46995..47287Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1575043694:45896..45915TCONS_00027927-exon-sc0000657-1575043694:45896..45915Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1575043694:45089..45232TCONS_00027927-exon-sc0000657-1575043694:45089..45232Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1575043694:44382..44546TCONS_00027927-exon-sc0000657-1575043694:44382..44546Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1575043694:43035..43166TCONS_00027927-exon-sc0000657-1575043694:43035..43166Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1575043694:42470..42604TCONS_00027927-exon-sc0000657-1575043694:42470..42604Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1575043694:41054..41638TCONS_00027927-exon-sc0000657-1575043694:41054..41638Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1510915933:46995..47287TCONS_00027927-exon-sc0000657-1510915933:46995..47287Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1510915933:45896..45915TCONS_00027927-exon-sc0000657-1510915933:45896..45915Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1510915933:45089..45232TCONS_00027927-exon-sc0000657-1510915933:45089..45232Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1510915933:44382..44546TCONS_00027927-exon-sc0000657-1510915933:44382..44546Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1510915933:43035..43166TCONS_00027927-exon-sc0000657-1510915933:43035..43166Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1510915933:42470..42604TCONS_00027927-exon-sc0000657-1510915933:42470..42604Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1510915933:41054..41638TCONS_00027927-exon-sc0000657-1510915933:41054..41638Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1491911889:46995..47287TCONS_00027927-exon-sc0000657-1491911889:46995..47287Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1491911889:45896..45915TCONS_00027927-exon-sc0000657-1491911889:45896..45915Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1491911889:45089..45232TCONS_00027927-exon-sc0000657-1491911889:45089..45232Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1491911889:44382..44546TCONS_00027927-exon-sc0000657-1491911889:44382..44546Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1491911889:43035..43166TCONS_00027927-exon-sc0000657-1491911889:43035..43166Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1491911889:42470..42604TCONS_00027927-exon-sc0000657-1491911889:42470..42604Clytia hemisphaericaexon
TCONS_00027927-exon-sc0000657-1491911889:41054..41638TCONS_00027927-exon-sc0000657-1491911889:41054..41638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000657supercontigsc0000657:41054..47287 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311965	0	0.339734	0	0.798476	0.257848	30.4398	34.7862	161.136	101.697	163.275	196.159	35.1687	32.4096	138.587	215.217	71.4896	96.9798	23.5146	28.6821	21.2409	19.7256	69.8517	79.9033	26.3996	28.4444	109.678	120.739	595.174	646.596
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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