TCONS_00027890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027890
Unique NameTCONS_00027890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027890 ID=TCONS_00027890|Name=TCONS_00027890|organism=Clytia hemisphaerica|type=transcript|length=678bp
GTTGTGCTCTGTGATGTCTGAGTAGAAGATTAAATTTAGTACATTTTAAA
ATGTATTACTTCAAATTATTATAACGATAATCTTTACATATTTGGAAAAT
GATGCAAGGGTGAAATAATGAGAAGGGGGAACGATAGATATTACTTTGAA
GCCTTGGAGAACTGTTTGCTGTGAAGCAAAAGGTTATGTATTTTACTTTG
AATTTGGATATGCAAACCGTAAATGATTCTGGCTAGGGTTTGAATATATA
GACATCAATTCCCAATAttaaaattggtaaaagatacagGGCGATGTATG
AATTATCGAGACTCAACTGGATTATTTCTATCCTTAATTCTtttgaacac
ccctgtctcatcggCCCGATGACTTCTCATTGTCCATCGTGGAATGCGCA
TTTCAACgggaaagaaaattaaatgtatttttCCAACTGGGAACACAGGA
gggtatttttgattttgatattttcatacCTACACCAATCTCAACCAATG
TGTGCAATTTGAATATCGTAGAGAAGATCTTCGTGCTTTAAGTTCAATCA
TATGGCTAAAAAGTTAGGATACGTTTTTGTGGTTTTTAGTTATAGTTTTA
AGATGTTAGAAAACGTCTATTTTCCTCTATTTTATAAAGCCTTATTTTTA
TTAACATTCTTTTGAATtgaatgtcaat
Run BLAST on NCBI

transcript from alignment at sc0000653:49767..50444+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027890 ID=TCONS_00027890|Name=TCONS_00027890|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at sc0000653:49767..50444+ (Clytia hemisphaerica)
GTTGTGCTCTGTGATGTCTGAGTAGAAGATTAAATTTAGTACATTTTAAA
ATGTATTACTTCAAATTATTATAACGATAATCTTTACATATTTGGAAAAT
GATGCAAGGGTGAAATAATGAGAAGGGGGAACGATAGATATTACTTTGAA
GCCTTGGAGAACTGTTTGCTGTGAAGCAAAAGGTTATGTATTTTACTTTG
AATTTGGATATGCAAACCGTAAATGATTCTGGCTAGGGTTTGAATATATA
GACATCAATTCCCAATAttaaaattggtaaaagatacagGGCGATGTATG
AATTATCGAGACTCAACTGGATTATTTCTATCCTTAATTCTtttgaacac
ccctgtctcatcggCCCGATGACTTCTCATTGTCCATCGTGGAATGCGCA
TTTCAACgggaaagaaaattaaatgtatttttCCAACTGGGAACACAGGA
gggtatttttgattttgatattttcatacCTACACCAATCTCAACCAATG
TGTGCAATTTGAATATCGTAGAGAAGATCTTCGTGCTTTAAGTTCAATCA
TATGGCTAAAAAGTTAGGATACGTTTTTGTGGTTTTTAGTTATAGTTTTA
AGATGTTAGAAAACGTCTATTTTCCTCTATTTTATAAAGCCTTATTTTTA
TTAACATTCTTTTGAATtgaatgtcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015764XLOC_015764Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027890-exon-sc0000653-1491911889:49767..50444TCONS_00027890-exon-sc0000653-1491911889:49767..50444Clytia hemisphaericaexon
TCONS_00027890-exon-sc0000653-1510915933:49767..50444TCONS_00027890-exon-sc0000653-1510915933:49767..50444Clytia hemisphaericaexon
TCONS_00027890-exon-sc0000653-1575043694:49767..50444TCONS_00027890-exon-sc0000653-1575043694:49767..50444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000653supercontigsc0000653:49767..50444 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0756455	0	0	0	0	0.241834	0.563114	0.728386	0.783873	0.236875	0.153278	0.382613	0.15278	0	0.603311	0.821873	0.758852	0.74551	0.241239	0.168293	0.863371	1.10102	0.26565	0.473121	0	0.652522	0	0.813113	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top