TCONS_00027828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027828
Unique NameTCONS_00027828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length996

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027828 ID=TCONS_00027828|Name=TCONS_00027828|organism=Clytia hemisphaerica|type=transcript|length=996bp
ATGAACCGATAAACAAGATCGTTCTCAGattttataaatgaaataaaaat
gaccACTGCAACATCTCAAAAGAAGGCTATGGAAGTTGAAGTCACAGACA
GTGAAGAAGAAATGGAGAGTGATGGAGGTGAGGAGCTTTTTATGGATGAT
GACTTTGACGGTGatggtgaaaatgaaagttacgATGAAGAGGATGATAG
CGAACAAAAGCATGGCCATGAAGCTATGGGCGATGTCATCTCTAAAATCC
TACAAAAGAAAGTCACGACTGATACATCTGGACTTGTGTTATCAAAGAGT
CAGAGTACAAAGAAAAAACGTACAGCCCGGCAAGAAGAGATTAAAGCCAA
AAAGGCTAAAACTGAAGAATTATTAGATCAACGTGAAATGAACCATGTGT
TACCCATAGAGGTTAATGATGTGCCTAAAGAAGCAAGGCTTCGTCGTATA
GGAACTAAAGGTGTAGTTATGTTATTTAATGCTGTCAGTactcatcaaaa
atcaaaagcagaaaaaatgaaaacagctAAAACTGAAGGGGATAAAGTGA
gagttgaaaaatcaatgaaaaaatcTACATTCATGGACATGCTTAAGAAT
GATAAGAAAAGCTCAAAGAAAGTGAAACAAGAAATTAaagtaaaagaaga
agaagaagatgatgCTAACAAATCGAGttggaatgttttgaaaaatgatt
tcatGTTAGGGTCAACTCTCAAACATTGGGATAAAGATGATGAAGAAGGA
GgatcgaaaaagaaaaagaaaaatatcaaagaaactCTTGATGTTGAGGA
TTCGTCTGATGAAGCTGACCATTCTGATTGAAATGtatttcttttatctt
ttttagtacttttatattatatacaaagaaaattgtttcattaaaatgac
gtcattttaaaaGTGTTTTAGTGTTTTTTGTACATGTTAAAGATGACATG
TATCTTAGTTCTTTTAAATCTTAAGCTCTGATAACTTCGATTTGTG
Run BLAST on NCBI

protein sequence of TCONS_00027828-protein

>TCONS_00027828-protein ID=TCONS_00027828-protein|Name=TCONS_00027828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MTTATSQKKAMEVEVTDSEEEMESDGGEELFMDDDFDGDGENESYDEEDD
SEQKHGHEAMGDVISKILQKKVTTDTSGLVLSKSQSTKKKRTARQEEIKA
KKAKTEELLDQREMNHVLPIEVNDVPKEARLRRIGTKGVVMLFNAVSTHQ
KSKAEKMKTAKTEGDKVRVEKSMKKSTFMDMLKNDKKSSKKVKQEIKVKE
EEEDDANKSSWNVLKNDFMLGSTLKHWDKDDEEGGSKKKKKNIKETLDVE
DSSDEADHSD
Run BLAST on NCBI

transcript from alignment at sc0000647:118405..128256+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027828 ID=TCONS_00027828|Name=TCONS_00027828|organism=Clytia hemisphaerica|type=transcript|length=9852bp|location=Sequence derived from alignment at sc0000647:118405..128256+ (Clytia hemisphaerica)
ATGAACCGATAAACAAGATCGTTCTCAGGTAGACGCGAACCTTAATTGTC
AACTTGGCTAAACACCACAGGAAAATGATTTGTTCAACATAGACGCGCTA
AGAATTATGCACCCAACTGTATCCAAGGAGCTTATATATgcaaattcttt
tattacaccGTTTatctgaccgggtcactgaaaAAGGGGTGTTCTATAAT
ATTCGTAATCTCACTCTCACAGGGGTACTTAGCAACAAAATAGGGGCTAA
ATTTGTCGGGTCAGTACTTTATAAGTATGATTTACGGTAAGAAGTGATCC
CGAAAACACGAAAACGGTAAAATTACCAAGCATTTGCGGAAAAATTCTCA
TTGCATCTCAACATTAAACGAGAACCTTCTGTTCTTTAGATTGACTAATA
ATGCAAAGAATTATGAATAATGTAAATCGTTGCAGTGTGTATTTTACGTA
CTAAATTTAAGTGCTTCTAGGAGTCTTGTCCTAAAACGCTTTGGATTACT
ACAGAACCACCCGAACTTGAGAATTTACTGAGCTTAAAATCCGTCAAAAT
TCACCAATTCCTTTATCTTTACTATTCATGCATGTAACGAGATTCAGAGG
GCTTAGAATCTGTGTTGTCTGTAGGGCCACAAAGCGTCAGCATAATATGG
ATTCGAGAGGCGATAAGCCTAGGCCATTGTAATGGAAGCCCAGTGATGGA
GCTATATTTGTGAACCTGCTTGGGGCTTTTCTGGTTACTGTTGCAATTAT
AAGAGGTGTACAATGGTCCAATGCatcactgtaaatcagctttaaCTACA
TAAATAAAACACAGCGCCTTCAGCTAGTTGAAGAAGCCATATTAAAATAA
TGCTTCCCTTTTCCTCTTACGCTACATGTCAAAATTATCCtcgttttctt
acaaaaatctaagtataatattaggaaatcttgatttcaaaatttttatt
tgtttctgACATGGCTTGCTGATGGTGATTCCATTTTCCTTTCCCCTCGT
GAAGCTTTAAGGCTCTAGAAACATCTGGTCTCTTTGGTTTTGTCAGAACG
ACTGGACATCCCTCTCTTTCgtatttttgtagaaagcactgctagcttcg
ttgccgccttgTTAAAACATAAAACGAAACAATAAATCTTGATgatcttg
ggaataccttgctaacaacgtcaaaacttcgagaaaagtctctgttgttc
tactcttctcaagtcttttatctatatcataacaaagatgaCAGATGCGA
AATCATCGTCATTTGTCAAAACTctgactaatatttctaaattttgactc
aaaagtatgaaataagtttatagagtatgggattcaaattatgatattct
tatgacacaggctctcaactttggcatactatttttttttggaattggaa
tgacaaaagtgattcaaaagtatacacgcaattgaaattctccattttag
cttataaaaaaaattgagcaaCGAAGCTCACATCAAAAACACAATGGAAA
GATAGACGCCCAGTTACGATTTATCCCATGTGAAGGTGCAGTAGTTTACC
AAGTATTGACCAACGTCCTACTCGGTGCTGTGTTTCACTTAATAATGCAA
AGTTAATGTTACTTTGCTAAGACCAACCCAAAACATGCGAAGGCCGTTGC
GTGGACAGAAACTCTACAGGCCGTTCAGCAACTGTGCGAGAAATATTTGC
TAGTGTCTAGCAAGCttgcaagaaataaaaactttggggcttggttcttt
tttaggaaaataattcaaagtctGACGTCTTGCGCAGACAAGGCTATCCA
GGCTTAGTGGACTCAAAACCAGACTATTTTCTTCAACATTTTATGATTTA
GTAACTACGCAGTTCTGGAAGTTCTAAGCGCTTCTCAAAGTCTCAAAGAC
AGGCTACACAGATTTCGAGCCCTCTAAATCTCGTTACatgcatgaataat
aaagaACAATAAAGAGttagtggcgttgtgggaaaatttttctggagggg
ccaaagtcaattatTTTAGAAAAGGTGCCCCCACCCACCAGTTGCNccga
aaattttttgaaaatcaactgccaagataccctaaatcaccaaataaaaa
tagacactTGAAAAATTGATACTTGCTAGAGcgaaaaagaaacttaaaga
agcAATGTGTAATGCGAACGAAacgagcgaaaaaattgatgttttatgat
ttcaatattgttgtcatcAAATTGATCATGGGGCGCAGTTAGGTTTTcat
taataatgctatattgtacacaaaaaaacttgtaaattagctagattgca
aagaagttaccaattagcTTTATTGTGAGCGAAAGAAATTGCAAGTAATT
TAAAATTATCCCAGCAAATTGGTCCTGGGtgcaatttaaggcgcataaag
tataatttttaagattggggcgtttaaaaaaatatcttttggcgcccctt
gctcttcggcgccccttcaaaaaggctccgctgggggggggcacGACTGG
GGTTTTTTTGTGGTAagtctactttaatgggataaactttcgcggggatt
aaatttcgtggttGGGTCTATCCGCAattaatgtgtatttcaacaaccaa
catgtatGATTTGACAGTGAAAGTCAccaaatcttgaaaatattgacacc
cgcgaaattaagtccccaagatttttttgaatttcgcggatagacccaac
cacgaaatttaatccccgcaaaagttttattattcaaaaagtatttattt
gacatattttgagttttgtttagaaatattttgcggatgaagcccttcca
aatttccattgggacttaatttcgcggattttctcGGGACaccaaaatcc
gcgaaatccgcgaaatttaatctccgcaaatgtttatcccattaaagtaa
acattttagggcaaaataacCACCTAGAATTacttaattctggtctgtaa
aatacacacaacGATTTACATGAATTCTTAATTCTTTGCATTTGTTAAAC
TAAAGAATAGAAGGTTCAACTTTGTTTAATGTCGAGATAGAATGAGAGGC
ATTGTCAAATCTTTGAGTAATAGCTTGGAAATTAGTATGATATGAAGAAT
CGAGTGGCTCTAAACTTTATTGAGAATCATTTCActcattcatttcagac
aaaaaggccaattttgagagaaaaatatcttttttcgacTGTAAGGAAAT
TgcactctggtctgtaaagtacacATTTTAACTGCAAacctattgaaaat
tttcaaaaacaatttttaatgccttttctgggagcacataaagttttgat
atgtttaaaagcaaaagcagccaaacctgagaaaacgaaagtgatttata
tctcgagatgggaaagttttcagacccaactttgtatctcaaaattaatc
agtatcaaatttccgatagattgatatatgataagcctatatttgggttg
gaagaattttcagttttgcctatggaggtgacatgaccaaaaatccgcca
ttatggatacccaggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGGAGACCATAGCGTCACAACTTCATGTCGTTGCCGTTCAGAGCCA
TTCATAAGTCATGTATTGATGTTTTTCatatttggactgaaaaaaaatag
aaataatgaaaatttttaagtggtaccgtaagttggtctaatgccgacat
ccctcttctaatttcaacaccctACTTCTAATTTTggcacccttctttag
agacagcaATATTAGGAAGTTCAGGATTGCTAAtagacaaattttttttc
caatcgattgccaaggaaagaaaaatagtttccatcagcgattTCGACCT
TCCTATAATTCCTATccctaaagaagggtgtcaaaattagaagaggaaTG
TCGACATTATTAGACTAACTTACGGTAGCTCAAACACATGCGGAAGGGTA
ACAGTAAACTAATACCTGACTTCCCTTCGCCAAAACAATctacagttagg
aacatttggcgagttcctgtacgcggcagcaataaaaaaaatcataaccg
cACTCACAAAAAAATAACGTTTGCGTCTTTTTAAACCGTTTTTTGCCTAG
ACAgtatagcaaacatagtaagtataaggagactgtgcctttaattggct
ctaaaaaatttctccaactttcaacaatgatagaacacacctatttaaac
aaaattagccagcgcattttttatctttctatttcttcatcttcaatgaa
gctctcaaagttaaatagaattaagcacaaaagataTTCTTATAGTTGTG
AAATGCTGTTTGCGCTTTCGCCACGGTAGAGTGCATTCATACTTCTGTTG
gctgatcatattgggcgtttcgTCGTTACCACCCTCAAAGCAGCGGGTGC
CTTTATCATTTCGCAAACcctgtccaccattttaaatgatttaacaatag
atccaaaagggtgCCCTCATCAAGGAAGATCATTTGCATTGCTCTCAGGC
TTTAGGAAGTAGTAATGTTTTcagttgttttcgatggaaaatggtaagaa
acttaagtttacaagtgtcatttagtttttgctggcctGATAGGATGGCA
GAATACTGGATGGCTTCCCTAACCGATCTAGATATTTTCCAGGGAGTgga
tttttagtttttcttctgTTTCTTTATGTTCAGTTCCGGGTAGTCTTCAT
ATGGAAAACCCATGAAAACCGGTAACTTAATTTTATAATATCTATAATAA
CGTTGATCAGGTCTGCCTCCACACTGATCAATTAAAAATACATATCCCTT
TTCTaaagtttttcgatttttacaatttattcTGAAGCCAAGATACGACG
TTTTGAAATCTCAGTACCTCAGGTTGAAACTATCATTTTCAAGCCGTAAC
TTAAAATTGCAAGCCTAAATATCTTCACTTCaatatttttgcctttttac
GTAAAGCATAGCACTCCAGCGTAGGAAGATATAGCAACTGTGCCTAATTA
TATCATGAGTTGTCCTAAATCCGAGagcagccctgcctaaatccgacccc
ccaaataactgctatgaaaatataatattccctttccaagttgaacaata
aactattgcaataACTCTCGAAagaaaacatctaacaagatgactataat
gtcaagatttCAATTATTAATGTGATCataaagtgtgagttgtaaaataa
ttacctccattattattctgaatctgttgctcgtgttttgaacgttaaca
attttgtaataaaaaattgtaTGTTTTGTATATAAGAAAAAGCAatttgt
tatttggttcaattggttcagtgtatcaaatcctCCAGTTTAGTTGATAC
TTTGGTATCCTCATGGTGTCACagtgaaaggtttgtttttattttagttt
gtatctttgaaagatccCATctgatttaggcagggctgtcagatttagga
ccccTCACAGTAGGTAGTTAACCGTATGGAAAAGGAGACAAGTAATATAT
ATAGCAACAGCATCAAATTCAGTCTGAGAAATCCTCTTAATTGCGCGCTT
GACTCTCAAGGCTGTAAGCGCAATTACACAGTTGAAATTTACAACCGTGT
GCAAGTGAGCGCTTATATGATCCCGCCCCGGNCCGAGagcagccctgcct
aaatccgaccccccaaataactgctatgaaaatataatattccctttcca
agttgaacaataaactattgcaataACTCTCGAAagaaaacatctaacaa
gatgactataatgtcaagatttCAATTATTAATGTGATCataaagtgtga
gttgtaaaataattacctccattattattctgaatctgttgctcgtgttt
tgaacgttaacaattttgtaataaaaaattgtaTGTTTTGTATATAAGAA
AAAGCAatttgttatttggttcaattggttcagtgtatcaaatcctCCAG
TTTAGTTGATACTTTGGTATCCTCATGGTGTCACagtgaaaggtttgttt
ttattttagtttgtatctttgaaagatccCATctgatttaggcagggctg
tcagatttaggaccccTCACAGTAGGTAGTTAACCGTATGGAAAAGGAGA
CAAGTAATATATATAGCAACAGCATCAAATTCAGTCTGAGAAATCCTCTT
AATTGCGCGCTTGACTCTCAAGGCTGTAAGCGCAATTACACAGTTGAAAT
TTACAACCGTGTGCAAGTGAGCGCTTATATGATCCCGCCCCGGTTGGGAT
TGCTTGAGCAGATCAGATCACAGAGGGTtcggatttttcaaaatatggcg
CATACATGGTCAAACAGGCAAAAGTTTTTAACACAATCATTTTCTACAAT
AAATTTTGAGCAAGCAATCGGAAGCAGCAAATAAAGTTTAATAAACACCC
ATTCAAATAGTGATAAGCATGTAATTAGACCCTTAAAAAATTCTACATAT
TTGATAGCCTTGTAATTGCATCTTTAAATCTCGGAAGTTAAGCGTACAAT
TAAGAGGTTTTCCCAGACTGAAATTACTTTTCCATAATGGCAAAAGAAAG
ACTTTATTTTCTCGACTTGATTCTGAATGGTTTTGTTCTTCTCTTTTTTT
CGCTAatctgttttttatttgaatggCAGTTTTTTTAATCTTTCGATTAG
GAAAATTTGTGAATTAATTCATGCAGCGGCATGGCTGAATAAACACTTTA
CATAATCAAACGGAGTTTCAGTCAAACTGTTTTAACTGTTCCAAACTTCt
ctcaaaaagattttctgacGTCTATGTTCAATCTATTGAATGATGATTTT
TATTAGTCTTGTACTAGACGGTTCCTGTTGTCCCAAACACCGGATCCTCT
CTAATTCTAAATGAAGGGgaatttgaattagtttttCATCAAAGATGGGA
GTACATCGTTTTAGTGGATAATCCTCATTATTGTTAATACCTTTTCATGC
TTCAAATGGAAAAAGAGAAAGTGACACGCCTTCTTAAATTCGAAAATTTG
CAGTGACATCACatgatattttgaataattgacgtcagaatTATTTTGTT
AGAACATCACTGTAGGGGCTTCTTCAATTCAAACGTCAAATCCCTTTTTG
GACGGGGTTTTTACTGGAACTTATTTTTTCACTCAATCacatatgaaaaa
tgaaattaaacacACAGTTAAAACTAAGACGTATTATGTACTgctttttc
gaaagaaaattatgtttttgtcTCAAAACTGCACAAAATCCTTCTTTCCT
ACTCAAATCAACCCCCTGACAAACCGAAATTGCAAATGGTAGGCACCATT
TTAGCGTGACAgacagaaaatatgaaattcttTTAGTATAGAAGATAGCA
GATCTCAACTTCCTCTTGAATATCTAATtatgaaaatgtgaaaattttgc
aaatataAATACTTAAAAGGCTAGCATTTTATCCCCTTGCTAAATCCCCT
TGTAGGTTAAAGATATAGTACTTTGACTTTCtagattttataaatgaaat
aaaaatgaccACTGCAACATCTCAAAAGAAGGCTATGGAAGTTGAAGTCA
CAGACAGTGAAGAAGAAATGGAGAGTGATGGAGGTGAGGAGCTTTTTATG
GATGATGACTTTGACGGTGatggtgaaaatgaaagttacgATGAAGAGGA
TGATAGCGAACAAAAGCATGGCCATGAAGCTATGGGCGATGTCATCTCTA
AAATCCTACAAAAGAAAGTCACGACTGATACATCTGGACTTGTGTTATCA
AAGAGTCAGAGTACAAAGAAAAAACGTACAGCCCGGCAAGAAGAGATTAA
AGCCAAAAAGGCTAAAACTGAAGAATTATTAGATCAACGTGAAATGAACC
ATGTGTTACCCATAGAGGTTAATGATGTGCCTAAAGAAGCAAGGCTTCGT
CGTATAGGAACTAAAGGTGTAGTTATGTTATTTAATGCTGTCAGTactca
tcaaaaatcaaaagcagaaaaaatgaaaacagctAAAACTGAAGGGGATA
AAGTGAgagttgaaaaatcaatgaaaaaatcTACATTCATGGACATGCTT
AAGAATGATAAGAAAAGCTCAAAGAAAGTGAAACAAGAAATTAaagtaaa
agaagaagaagaagatgatgCTAACAAATCGAGttggaatgttttgaaaa
atgatttcatGTTAGGGTCAACTCTCAAACATTGGGATAAAGATGATGAA
GAAGGAGgatcgaaaaagaaaaagaaaaatatcaaagaaactCTTGATGT
TGAGGATTCGTCTGATGAAGCTGACCATTCTGATTGAAATGtatttcttt
tatcttttttagtacttttatattatatacaaagaaaattgtttcattaa
aatgacgtcattttaaaaGTGTTTTAGTGTTTTTTGTACATGTTAAAGAT
GACATGTATCTTAGTTCTTTTAAATCTTAAGCTCTGATAACTTCGATTTG
TG

Coding sequence (CDS) from alignment at sc0000647:118405..128256+

>TCONS_00027828 ID=TCONS_00027828|Name=TCONS_00027828|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0000647:118405..128256+ (Clytia hemisphaerica)
atgaccACTGCAACATCTCAAAAGAAGGCTATGGAAGTTGAAGTCACAGA
CAGTGAAGAAGAAATGGAGAGTGATGGAGGTGAGGAGCTTTTTATGGATG
ATGACTTTGACGGTGatggtgaaaatgaaagttacgATGAAGAGGATGAT
AGCGAACAAAAGCATGGCCATGAAGCTATGGGCGATGTCATCTCTAAAAT
CCTACAAAAGAAAGTCACGACTGATACATCTGGACTTGTGTTATCAAAGA
GTCAGAGTACAAAGAAAAAACGTACAGCCCGGCAAGAAGAGATTAAAGCC
AAAAAGGCTAAAACTGAAGAATTATTAGATCAACGTGAAATGAACCATGT
GTTACCCATAGAGGTTAATGATGTGCCTAAAGAAGCAAGGCTTCGTCGTA
TAGGAACTAAAGGTGTAGTTATGTTATTTAATGCTGTCAGTactcatcaa
aaatcaaaagcagaaaaaatgaaaacagctAAAACTGAAGGGGATAAAGT
GAgagttgaaaaatcaatgaaaaaatcTACATTCATGGACATGCTTAAGA
ATGATAAGAAAAGCTCAAAGAAAGTGAAACAAGAAATTAaagtaaaagaa
gaagaagaagatgatgCTAACAAATCGAGttggaatgttttgaaaaatga
tttcatGTTAGGGTCAACTCTCAAACATTGGGATAAAGATGATGAAGAAG
GAGgatcgaaaaagaaaaagaaaaatatcaaagaaactCTTGATGTTGAG
GATTCGTCTGATGAAGCTGACCATTCTGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015724XLOC_015724Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027828-proteinTCONS_00027828-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027828-exon-sc0000647-1491911889:118405..118432TCONS_00027828-exon-sc0000647-1491911889:118405..118432Clytia hemisphaericaexon
TCONS_00027828-exon-sc0000647-1510915933:118405..118432TCONS_00027828-exon-sc0000647-1510915933:118405..118432Clytia hemisphaericaexon
TCONS_00027828-exon-sc0000647-1575043694:118405..118432TCONS_00027828-exon-sc0000647-1575043694:118405..118432Clytia hemisphaericaexon
TCONS_00027828-exon-sc0000647-1491911889:127289..128256TCONS_00027828-exon-sc0000647-1491911889:127289..128256Clytia hemisphaericaexon
TCONS_00027828-exon-sc0000647-1510915933:127289..128256TCONS_00027828-exon-sc0000647-1510915933:127289..128256Clytia hemisphaericaexon
TCONS_00027828-exon-sc0000647-1575043694:127289..128256TCONS_00027828-exon-sc0000647-1575043694:127289..128256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000647supercontigsc0000647:118405..128256 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.105	28.1343	12.6073	9.53782	92.2831	69.5125	60.2174	66.4127	44.5217	41.6899	29.7323	23.688	18.7682	22.262	26.4425	25.7122	40.3725	28.9282	12.5073	13.2886	34.9121	29.6571	69.8815	61.6528	28.5561	29.1573	19.5948	16.4262	40.4283	42.9232
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012459Rrp15
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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