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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027822 ID=TCONS_00027822|Name=TCONS_00027822|organism=Clytia hemisphaerica|type=transcript|length=868bp
ATAAATATTAATTAATGACTGCAGATAAGAGACTTTAAGGAAGTCCGAAA
GTCGCTCATTTTGATGAAACATATAACAGCATTGAAAATTGAGTTCAAAG
CGATCATAAAATATCGGATAACATCAGCTATTTGACGGTCTTGAAGCGAA
GCCTTGTGAGTGTTTACCGTGAAAAAGATCTCTGTTGAAGCCAAAACTAT
CAAAGTTAACATCTGACATGCCAAAATCATTGTCAATAAAGAAATGGCTT
GTTTCGATTCTTCTCTTATCCTTGTATTCTCTCCTCCTGTTAACAGTGGT
TGTTCTTTGTCTGCGCCGCGTTTAGATAACACGTTTCTTGTGCGGAAATA
TATCATGGAAAGTGAAAGGATAAGTATCGCCACGAATGATATTAATTTAA
CCACGCCAAAGACGGGCAAAAACTTTCTAAAGAAGTTATCAATGGTGAGC
GCAACTGATAAAACCCATATTGCCACTGTGTACTTCACGAAAAGTGCCAA
CCTCGCATTTGCACGATGTTTGAATGGGTTTTCAATTGCCCTGTACCTAT
CATAAGCGAGAAAGATTGTAGTCAAAAATTCTGCATAAAAGCTTATAATG
GAAGCtgctttaaaaatgtttaaaatgagGACGTTTTGAGGATCAGCCAT
TTTGAAAGTTGCATAAGCAGTGAAAGGTGTTCCAATAAGACCAACAGCCA
TGTCGCAGACAATGAGATGTACCAAAAGGTAGTTTGAAAGTCTTTGCAAT
TTCTTTACCGGATCTTTGATGATAGCCAAGATTAGCAATCCGTTTAAAAC
GATGCATATAAGAGCCAAGAGAATCAATGTAGCTCCGCAACACTGACTAA
GTAATTGGACATCCATTG Run BLAST on NCBI protein sequence of TCONS_00027822-protein >TCONS_00027822-protein ID=TCONS_00027822-protein|Name=TCONS_00027822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MDVQLLSQCCGATLILLALICIVLNGLLILAIIKDPVKKLQRLSNYLLVH
LIVCDMAVGLIGTPFTAYATFKMADPQNVLILNIFKAASIISFYAEFLTT
IFLAYDRYRAIENPFKHRANARLALFVKYTVAIWVLSVALTIDNFFRKFL
PVFGVVKLISFVAILILSLSMIYFRTRNVLSKRGADKEQPLLTGGENTRI
REESKQAISLLTMILACQMLTLIVLASTEIFFTVNTHKASLQDRQIADVI
RYFMIALNSIFNAVICFIKMSDFRTSLKSLICSH Run BLAST on NCBI transcript from alignment at sc0000646:69080..69947 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027822 ID=TCONS_00027822|Name=TCONS_00027822|organism=Clytia hemisphaerica|type=transcript|length=868bp|location=Sequence derived from alignment at sc0000646:69080..69947 (Clytia hemisphaerica)
CAATGGATGTCCAATTACTTAGTCAGTGTTGCGGAGCTACATTGATTCTC
TTGGCTCTTATATGCATCGTTTTAAACGGATTGCTAATCTTGGCTATCAT
CAAAGATCCGGTAAAGAAATTGCAAAGACTTTCAAACTACCTTTTGGTAC
ATCTCATTGTCTGCGACATGGCTGTTGGTCTTATTGGAACACCTTTCACT
GCTTATGCAACTTTCAAAATGGCTGATCCTCAAAACGTCctcattttaaa
catttttaaagcaGCTTCCATTATAAGCTTTTATGCAGAATTTTTGACTA
CAATCTTTCTCGCTTATGATAGGTACAGGGCAATTGAAAACCCATTCAAA
CATCGTGCAAATGCGAGGTTGGCACTTTTCGTGAAGTACACAGTGGCAAT
ATGGGTTTTATCAGTTGCGCTCACCATTGATAACTTCTTTAGAAAGTTTT
TGCCCGTCTTTGGCGTGGTTAAATTAATATCATTCGTGGCGATACTTATC
CTTTCACTTTCCATGATATATTTCCGCACAAGAAACGTGTTATCTAAACG
CGGCGCAGACAAAGAACAACCACTGTTAACAGGAGGAGAGAATACAAGGA
TAAGAGAAGAATCGAAACAAGCCATTTCTTTATTGACAATGATTTTGGCA
TGTCAGATGTTAACTTTGATAGTTTTGGCTTCAACAGAGATCTTTTTCAC
GGTAAACACTCACAAGGCTTCGCTTCAAGACCGTCAAATAGCTGATGTTA
TCCGATATTTTATGATCGCTTTGAACTCAATTTTCAATGCTGTTATATGT
TTCATCAAAATGAGCGACTTTCGGACTTCCTTAAAGTCTCTTATCTGCAG
TCATTAATTAATATTTAT Coding sequence (CDS) from alignment at sc0000646:69080..69947 >TCONS_00027822 ID=TCONS_00027822|Name=TCONS_00027822|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at sc0000646:69080..69947 (Clytia hemisphaerica)
ATGGATGTCCAATTACTTAGTCAGTGTTGCGGAGCTACATTGATTCTCTT
GGCTCTTATATGCATCGTTTTAAACGGATTGCTAATCTTGGCTATCATCA
AAGATCCGGTAAAGAAATTGCAAAGACTTTCAAACTACCTTTTGGTACAT
CTCATTGTCTGCGACATGGCTGTTGGTCTTATTGGAACACCTTTCACTGC
TTATGCAACTTTCAAAATGGCTGATCCTCAAAACGTCctcattttaaaca
tttttaaagcaGCTTCCATTATAAGCTTTTATGCAGAATTTTTGACTACA
ATCTTTCTCGCTTATGATAGGTACAGGGCAATTGAAAACCCATTCAAACA
TCGTGCAAATGCGAGGTTGGCACTTTTCGTGAAGTACACAGTGGCAATAT
GGGTTTTATCAGTTGCGCTCACCATTGATAACTTCTTTAGAAAGTTTTTG
CCCGTCTTTGGCGTGGTTAAATTAATATCATTCGTGGCGATACTTATCCT
TTCACTTTCCATGATATATTTCCGCACAAGAAACGTGTTATCTAAACGCG
GCGCAGACAAAGAACAACCACTGTTAACAGGAGGAGAGAATACAAGGATA
AGAGAAGAATCGAAACAAGCCATTTCTTTATTGACAATGATTTTGGCATG
TCAGATGTTAACTTTGATAGTTTTGGCTTCAACAGAGATCTTTTTCACGG
TAAACACTCACAAGGCTTCGCTTCAAGACCGTCAAATAGCTGATGTTATC
CGATATTTTATGATCGCTTTGAACTCAATTTTCAATGCTGTTATATGTTT
CATCAAAATGAGCGACTTTCGGACTTCCTTAAAGTCTCTTATCTGCAGTC
ATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027822-exon-sc0000646-1491911889:69080..69947 | TCONS_00027822-exon-sc0000646-1491911889:69080..69947 | Clytia hemisphaerica | exon |
| TCONS_00027822-exon-sc0000646-1510915933:69080..69947 | TCONS_00027822-exon-sc0000646-1510915933:69080..69947 | Clytia hemisphaerica | exon |
| TCONS_00027822-exon-sc0000646-1575043694:69080..69947 | TCONS_00027822-exon-sc0000646-1575043694:69080..69947 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000646 | supercontig | sc0000646:69080..69947 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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