TCONS_00043372-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043372-protein
Unique NameTCONS_00043372-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043372-protein ID=TCONS_00043372-protein|Name=TCONS_00043372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
FIGQRNDDNVYSFESDIAIDNINLNEGNCSGPIDGRYTEWSSWGMCDQAC
GMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEW
GPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCN
DIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQCPMEK
KLYNLTMYALQDRREEPCYAGECLT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027077XLOC_027077Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043372TCONS_00043372Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 53..64
score: 46.13
coord: 72..83
score: 29.02
coord: 35..48
score: 35.46
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 94..155
e-value: 1.0E-13
score: 61.6
coord: 160..224
e-value: 0.0021
score: 27.3
coord: 37..89
e-value: 8.5E-11
score: 51.9
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 95..136
e-value: 2.0E-9
score: 37.4
coord: 39..88
e-value: 9.5E-9
score: 35.2
coord: 160..200
e-value: 0.0023
score: 18.0
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 33..88
e-value: 1.5E-14
score: 53.5
coord: 156..223
e-value: 9.9E-10
score: 38.1
coord: 90..154
e-value: 6.5E-14
score: 51.5
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 91..155
score: 11.641
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 34..89
score: 11.793
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 157..224
score: 9.106
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 91..132
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 33..83
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 157..197

Blast
[Close]
BLAST of TCONS_00043372-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 4.880e-38
Identity = 71/165 (43.03%), Postives = 95/165 (57.58%), Query Frame = 0 
Query:   32 PIDGRYTEWSSWGMCDQACGMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEWGPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCNDIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQC 196
            P+DG ++EWS W  C ++CG G Q RTR C NP+  +GG  C G  ++   C I+ C  +G WSAW  WG C +SCG G +TR R C+NPPP   G  C  +G+ T+       +Q CN+  C   G W  WA    CSV CG G +   R C++PVP  GG++C
Sbjct: 4584 PVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC--DGAETQ-------MQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC 4739

HSP 2 Score: 139.813 bits (351), Expect = 6.390e-38
Identity = 72/173 (41.62%), Postives = 92/173 (53.18%), Query Frame = 0 
Query:   25 NEGNCSGPIDGRYTEWSSWGMCDQACGMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEWGPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCNDIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQCP 197
            NE NC  PI G++  W+SW  C  +CG G + RTR C++P P  GG  C G  +Q+  C    C  +G WS W+ WG C ++C GG   RYR C NPPP   G  C   G        D  +Q CN  +C  DG W +W    +CS  CG G K   R C +PVP+ GG+ CP
Sbjct: 4693 NERNC--PIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC--GGP-------DSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCP 4854

HSP 3 Score: 121.709 bits (304), Expect = 1.064e-31
Identity = 65/164 (39.63%), Postives = 84/164 (51.22%), Query Frame = 0 
Query:   33 IDGRYTEWSSWGMCDQACGMGKQNRTRYCTNPAPMNGGSWCMGEHMQNQTCKIKDCDRNGEWSAWTEWGPCDKSCGGGNKTRYRECHNPPPMGNGLQCLLNGSSTERSMIDMDVQTCNDIICDRDGGWNAWAVAVECSVECGNGTKVSLRNCTNPVPLGGGKQC 196
            + G +++WS+W  C   CG G Q R+R C  P P NGG  C G  ++ + C+ K C  +G WS W+ W  C +SCG GN+TR R C+NP     G  C   G++ E  M       CN   C   G W+AW     CS  CG GT+   R C NP P  GG  C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC--EGNAVEIIM-------CNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC 4682
The following BLAST results are available for this feature:
BLAST of TCONS_00043372-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN14.880e-3843.03Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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