TCONS_00043118-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043118-protein
Unique NameTCONS_00043118-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043118-protein ID=TCONS_00043118-protein|Name=TCONS_00043118-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MKAREQACNCNIVVTQPRRISAISVAERVATERSEPLGHSVGYSVRFDTV
LPRGQASILFCTVGTLLRRLENGMTGISHVIVDEIHERDINSDFLLIILR
DMLQIFPNMRVILMSATIDTTIFSQFFGDCPIIELEGRVHPVQEYYLEDC
IQMLGFVPPLNTKKKREEFEDVEEKEENLNTVCEGDYSLQTKNSMAQLSE
REIPIELVEGLLTYISTLRVPGAVLVFLPGWSVIHKFVKYFQMHQVFGSR
DYVILPLHSQIPREDQRRVFQPVAENVRKIIFSTNIAETSVTIDDVVFVI
DSCKAKIKLFTSHNNMTNYAKVWASRTNLEQRRGRAGRVRPGFCFHLCSR
ARYEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_026848XLOC_026848Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043118TCONS_00043118Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR002464DNA/RNA_helicase_DEAH_CS
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 241..340
e-value: 1.0E-17
score: 74.8
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 215..339
e-value: 1.7E-14
score: 54.1
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 210..355
score: 13.661
NoneNo IPR availableGENE3D3.40.50.300coord: 139..355
e-value: 5.7E-40
score: 136.1
NoneNo IPR availableGENE3D3.40.50.300coord: 2..121
e-value: 4.7E-18
score: 65.0
NoneNo IPR availableCDDcd00046DEXDccoord: 12..118
e-value: 4.15659E-17
score: 75.4516
NoneNo IPR availableCDDcd00079HELICccoord: 209..347
e-value: 1.99324E-9
score: 53.3957
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 78..87
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..136
score: 15.79
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 9..121
coord: 189..350

Blast
[Close]
BLAST of TCONS_00043118-protein vs. Swiss-Prot (Human)
Match: DHX9 (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4)

HSP 1 Score: 491.5 bits (1264), Expect = 3.186e-164
Identity = 234/352 (66.48%), Postives = 292/352 (82.95%), Query Frame = 0 
Query:    5 EQACNCNIVVTQPRRISAISVAERVATERSEPLGHSVGYSVRFDTVLPRGQASILFCTVGTLLRRLENGMTGISHVIVDEIHERDINSDFLLIILRDMLQIFPNMRVILMSATIDTTIFSQFFGDCPIIELEGRVHPVQEYYLEDCIQMLGFVPP-LNTKKKREEFEDVEEKEENLNTVCEGDYSLQTKNSMAQLSEREIPIELVEGLLTYISTLRVPGAVLVFLPGWSVIHKFVKYFQMHQVFGSRDYVILPLHSQIPREDQRRVFQPVAENVRKIIFSTNIAETSVTIDDVVFVIDSCKAKIKLFTSHNNMTNYAKVWASRTNLEQRRGRAGRVRPGFCFHLCSRARYEK 355
            ++A  CNIVVTQPRRISA+SVAERVA ER E  G S GYSVRF+++LPR  ASI+FCTVG LLR+LE G+ GISHVIVDEIHERDIN+DFLL++LRD++Q +P +R++LMSATIDT++F ++F +CPIIE+ GR +PVQEY+LEDCIQM  FVPP  + KKK ++ +  E+ + N N +C  +Y  +T+ SM+QL+E+E P EL+E LL YI TL VPGAVLVFLPGW++I+   K+ +M+  FGS  Y ILPLHSQIPRE+QR+VF PV   V K+I STNIAETS+TI+DVV+VIDSCK K+KLFT+HNNMTNYA VWAS+TNLEQR+GRAGRVRPGFCFHLCSRAR+E+
Sbjct:  433 DRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEVYGRTYPVQEYFLEDCIQMTHFVPPPKDKKKKDKDDDGGEDDDANCNLICGDEYGPETRLSMSQLNEKETPFELIEALLKYIETLNVPGAVLVFLPGWNLIYTMQKHLEMNPHFGSHRYQILPLHSQIPREEQRKVFDPVPVGVTKVILSTNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFER 784
The following BLAST results are available for this feature:
BLAST of TCONS_00043118-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX93.186e-16466.48ATP-dependent RNA helicase A OS=Homo sapiens GN=DH... [more]
back to top