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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027551 ID=TCONS_00027551|Name=TCONS_00027551|organism=Clytia hemisphaerica|type=transcript|length=2212bpRun BLAST on NCBI protein sequence of TCONS_00027551-protein >TCONS_00027551-protein ID=TCONS_00027551-protein|Name=TCONS_00027551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp SCILDILDPFFFSVLWLPRFRQKKKTGMTGMKKFKGAALNLNTVQEDLVARun BLAST on NCBI transcript from alignment at sc0000632:135869..147097- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027551 ID=TCONS_00027551|Name=TCONS_00027551|organism=Clytia hemisphaerica|type=transcript|length=11229bp|location=Sequence derived from alignment at sc0000632:135869..147097- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000632:135869..147097- >TCONS_00027551 ID=TCONS_00027551|Name=TCONS_00027551|organism=Clytia hemisphaerica|type=CDS|length=13728bp|location=Sequence derived from alignment at sc0000632:135869..147097- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027551 vs. Swiss-Prot (Human)
Match: MP2K2 (Dual specificity mitogen-activated protein kinase kinase 2 OS=Homo sapiens GN=MAP2K2 PE=1 SV=1) HSP 1 Score: 452.595 bits (1163), Expect = 3.573e-152 Identity = 227/357 (63.59%), Postives = 272/357 (76.19%), Query Frame = 2
Query: 221 DVNEDQKSRLEEFLRDKQKIGSEIKDGDFERMEELGAGNGGVVMKMKHIPTNLIMARKLIRLEIKPAIRNQIMRELKVLHECNSPYIVGFYGAFQNDGEISLCMEYMDGGSLDVVVKKAERIPEKILGVVTYCVLKGLAYLREKHSIIHRDVKPSNILVNTRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTKYSVRSDLWSLGLSLVELAIGRYPIPCMTSDDITKIL------------RGDAKXXXXXXXXXXXXXXXEIKAMAIFELLDYIVNEEPPTLPKSYFSNEFCDFINLCLKKNPNDRADLKDLMEHQWVKGAEEQIDEIDFAGWV---QRLDDPGRPTNV 1246
+++E QK RLE FL K K+G E+KD DFER+ ELGAGNGGVV K++H P+ LIMARKLI LEIKPAIRNQI+REL+VLHECNSPYIVGFYGAF +DGEIS+CME+MDGGSLD V+K+A+RIPE+ILG V+ VL+GLAYLREKH I+HRDVKPSNILVN+RGEIKLCDFGVSGQLIDSMANSFVGTRSYM+PERLQGT YSV+SD+WS+GLSLVELA+GRYPIP + ++ I + + AMAIFELLDYIVNE PP LP F+ +F +F+N CL KNP +RADLK L H ++K +E ++E+DFAGW+ RL+ PG PT
Sbjct: 45 ELDEQQKKRLEAFLTQKAKVG-ELKDDDFERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLTNHTFIKRSE--VEEVDFAGWLCKTLRLNQPGTPTRT 398 The following BLAST results are available for this feature:
BLAST of TCONS_00027551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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