TCONS_00036921-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036921-protein
Unique NameTCONS_00036921-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036921-protein ID=TCONS_00036921-protein|Name=TCONS_00036921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
NLLSYPVRKESSFIIITSSHFFTLHLHIADLNKKSKTENMEAPTISHVYS
AIDTLYHSSQVEGKEEASKWLEKFQKSLYAWEICDQLLRENRDKESQYFA
AQTMKTKIQHHFSELPQQQHLSLRNSLMQHLLQYSLASHATLTQLCIALA
DLSIQSPQWENPVSDLIKIFSTKLEHFSVLLEVLMLMPEEVENEYLHIGK
NRREEVVVKYQRCSHEVLDLMLKCHEVCPSDDRTQCKLYQCFGTWLTLGS
FPAQVVVESKLLKLAFDTLVCVNLIYLIFLHKQSEFIH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021808XLOC_021808Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036921TCONS_00036921Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001494Importin-beta_N
IPR013598Exportin-1/Importin-b-like
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0008536Ran GTPase binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005488 binding
molecular_function GO:0008536 Ran GTPase binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001494Importin-beta, N-terminal domainSMARTSM00913IBN_N_2coord: 67..133
e-value: 3.5E-8
score: 43.2
IPR001494Importin-beta, N-terminal domainPFAMPF03810IBN_Ncoord: 67..133
e-value: 3.0E-11
score: 43.0
IPR013598Exportin-1/Importin-beta-likePFAMPF08389Xpo1coord: 140..270
e-value: 7.9E-16
score: 58.4
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 38..278
e-value: 3.1E-20
score: 71.5
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 47..269

Blast
[Close]
BLAST of TCONS_00036921-protein vs. Swiss-Prot (Human)
Match: TNPO3 (Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.094e-50
Identity = 97/227 (42.73%), Postives = 138/227 (60.79%), Query Frame = 0 
Query:   43 PTISHVYSAIDTLYHSSQVEGKEEASKWLEKFQKSLYAWEICDQLLRENRDKESQYFAAQTMKTKIQHHFSELPQQQHLSLRNSLMQHLLQYSLASHATLTQLCIALADLSIQSPQWENPVSDLIKIFSTKLEHFSVLLEVLMLMPEEVENEYLHIGKNRREEVVVKYQRCSHEVLDLMLKCHEVCPSDDRTQCKLYQCFGTWLTLGSFPAQVVVESKLLKLAFDTL 269
            PT+  VY A+  LYH     GKE AS WL + Q+S++AWEI DQLL+  +D ES YFAAQTMK KIQ  F ELP   H SLR+SL+ H+      S   +TQL +A+ADL++Q P W+  V  L++ +S  +     LLE+L ++PEEV +  L IG NRR E++      S  V+ L++ C E   +D++   K+++C G+W  LG   +  +  +KLL L F+ L
Sbjct:    6 PTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVL 232
The following BLAST results are available for this feature:
BLAST of TCONS_00036921-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TNPO31.094e-5042.73Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3[more]
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