TCONS_00036921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036921
Unique NameTCONS_00036921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036921 ID=TCONS_00036921|Name=TCONS_00036921|organism=Clytia hemisphaerica|type=transcript|length=910bp
AAAACTTGCTTTCCTATCCCGTAAGGAAAGAAAGTAGCTTTATTATAATT
ACCTCTTCACATTTTTTTACTCTTCACCTCCATATTGCAgatctaaataa
aaaaagcaaaactgaaaatatgGAAGCACCAACAATTTCACACGTCTATT
CAGCCATTGATACACTCTATCACTCTAGCCAAGTAGAAGGTAAAGAAGAA
GCTTCAAAATGGCTagagaaattccaaaaatcgTTGTATGCTTGGGAAAT
TTGTGACCAACTTCTTCGAGAAAACCGTGATAAAGAGTCACAATATTTTG
CTGCACAAACAATGAAAACTAAAATTCAGCATCATTTCTCTGAGCTACCT
CAACAACAACATTTGagtCTCAGAAACTCACTGATGCAGCATTTACTGCA
GTATTCCCTTGCCTCACATGCAACATTAACTCAGCTGTGTATAGCCCTTG
CTGATCTATCCATTCAGTCACCGCAATGGGAAAATCCTGTCTCTGACCTT
ATCAAAATATTTTCTACAAAGCTTGAACATTTCTCTGTGTTATTGGAAGT
GTTAATGCTGATGCCAGAAGAGGTCGAGAACGAATATCTTCACATTGGGA
AAAACAGAAGAGAAGAAGTCGTTGTGAAATATCAACGATGTTCGCATGAA
GTTCTTGATCTGATGCTAAAATGCCACGAGGTTTGCCCTTCAGACGATAG
AACACAGTGCAAGCTTTACCAATGTTTTGGAACTTGGTTGACACTTGGAT
CATTCCCTGCCCAAGTTGTTGTTGAAAGTAAATTGTTGAAACTGGCATTT
GATACTCTGGTATGCGTAAACTtgatttatcttatttttttaCATAAACA
ATCAGAATTCATTCACTAATGTGTCATTGGACTATGCCAGTTacattaaa
tattaaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00036921-protein

>TCONS_00036921-protein ID=TCONS_00036921-protein|Name=TCONS_00036921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
NLLSYPVRKESSFIIITSSHFFTLHLHIADLNKKSKTENMEAPTISHVYS
AIDTLYHSSQVEGKEEASKWLEKFQKSLYAWEICDQLLRENRDKESQYFA
AQTMKTKIQHHFSELPQQQHLSLRNSLMQHLLQYSLASHATLTQLCIALA
DLSIQSPQWENPVSDLIKIFSTKLEHFSVLLEVLMLMPEEVENEYLHIGK
NRREEVVVKYQRCSHEVLDLMLKCHEVCPSDDRTQCKLYQCFGTWLTLGS
FPAQVVVESKLLKLAFDTLVCVNLIYLIFLHKQSEFIH
Run BLAST on NCBI

transcript from alignment at sc0001535:3492..8374-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036921 ID=TCONS_00036921|Name=TCONS_00036921|organism=Clytia hemisphaerica|type=transcript|length=4883bp|location=Sequence derived from alignment at sc0001535:3492..8374- (Clytia hemisphaerica)
AAAACTTGCTTTCCTATCCCGTAAGGAAAGAAAGTAGCTTTATTATAATT
ACCTCTTCACATTTTTTTACTCTTCACCTCCATATTGCAGATCTAAATAA
AAAAAGCAAAACTGAAAATATGGAAGCACCAACAATTTCACACGTCTATT
CAGCCATTGATACACTCTATCACTCTAGCCAAGTAGAAGGTAAAGAAGAA
GCTTCAAAATGGCTAGAGAAATTCCAAAAATCGGTATGTTGCACTTATAT
TGTTATTCTTGCTTGGCTTACAGATTTTAAAGTTAATATTTTGATAGTCT
CACTTGATTATGGTGGCCTACAGAGACATTATAGCGATATAATTAATTAG
CTGATCGAAAAACAGTAAAAAAGCTCAATTAAATTTGAATTTACTTTCAT
TGAATAATCCACATCTTTGCCCTAATTATTGTCCTTCTCGGCCATGAAGT
GATTTTTTTTCAATTCATTTTGAATTTAATTTAATTCAGTTGTATTCAGC
TTTTGTGTTGTATTCTAATCAGAAATTTACTTTATAGGATTTCTTAAATA
CTTAATGTTGTTCTTGCTTTGCTTAAATTAAAGATTTAAAGTGAATATTT
TGATAGTCTTATTTGACTCCTTATGAAATACACAAAACTTTTTAGTTGTA
TTCAACTCTTGTGTTGTATTCTAATCCGAAATTAACTTTGTAGCATTTTT
AAGATTTAAAAATATTTTTTTCCATTTTATTACAGTTGTATGCTTGGGAA
ATTTGTGACCAACTTCTTCGAGAAAACCGTGATAAAGAGTCACAATATTT
TGCTGCACAAACAATGAAAACTAAAGTATTCTTTCTTTATAATATTTACA
AAAATTGTTTTTTATGATCTAATTCTTTGTGAACTTTATTATAATCTCTA
GTCTCTTTTGCAGCCAATCTTGGCTTAAAGTTGATTGGTCTAAAATTGAC
TTTCAGAGATAAACCTTTATTGTAAAATCTCAGTTTTCTAAAAGGCATTT
TGGCTTAATTTAAAGTATTTCAGCCCTATCGCATGTTGGCCTAAGCTCAT
GAAACGGCCTCTTTCAGAAATGAAGAAGAATGCTTTAAGTTTGTTACAAG
CGAGTTTTTATTTCGAGCTAATTGCTTATTATTAGTTGCTTTTATTTGTT
TTCACCACAGTTCATGTTTTTCTCTCTTTTTTATAGATTCAGCATCATTT
CTCTGAGCTACCTCAACAACAACATTTGGTTAGTTATTTTTATTTGTAAC
CAATATGCACAGACAAGGCTATTCAAACCTCGTAAAAGATGGCTAAGTTG
CACCGCCACCATGCTTTTTTTACAGAAAGATGAAGAATGGTACTGTATGA
ATCTTTTTACCCACTTGTGATTTTGATTTCACCTTATTTTTCATTTTTCA
GAGTCTCAGAAACTCACTGATGCAGCATTTACTGCAGTATTCCCTTGCCT
CACATGCAACATTAACTCAGGTTTGTGTTTAAATCAAATGCCATTATTTT
TCGAGTACAGCTGCAGGCTGCTGACCCATAGCCGCGTAGTGGTGTCAAAA
TTTGAATCTCAAAAATATTAATCCCTATACTTAATTTTTTTGGTGGGTAA
AATGGGTGAGGACTTGCCAATTTAGCAAACCGGAATTTTTCTGGTTTACA
AAAAGATTCCCTAATTTCCTGATTTTCTAATTGTGAAAAATCGAATTGTT
GCGATAAGCTTTATAGACTTGCAGCTCTGCCACATTTTCATCAGGTGATT
GACAGCTAGGTGTCAAAAAAGCATTATTCCAGGGTGATGTGTGTCCGTAT
TTTCTTGATAATTGGCTTCAAAATAGTGGCAGGGTTCCTCTTTTTCCTCA
AAGAAAAAGTTAGTACCGGGGGTGGTGGTACCTAGACAAATTTCAAACCA
GGTTTAAAAGGCTAATAAAGCTATTACCCTATGGGATGGTACCCTGTGAG
ATTACCCCCTGCCAAAATTATTAATATCCTACTGTTGTCCAGGAATCAAA
GATATCAATTTATAAATGACACCTTGAAAACGGCCTTGGCCGAAACATTT
TGGAAATTTCTAGCATCTAATGGTATTTTTGTCTCGATCCTCCGTCCGAT
ATAATTTATAATGACTTTACTTTCACTTTACTTTAGCAAAGTAGGGTATG
ATTTATGACCCTGAAACTTTTTTTGTTTCCTCGCAATTCTAATAAACCTG
TCTTGATAACCCTGTTCGCACGAAACAATTATATAGATCTTTAACATCCA
TCTAACACTAGATTGCCGTTTACGCAACTTTTTGTGTCACCTGCGTATTA
ACATGTTTGAAACAGACAGCCAATTATTACTATGTAACAGAGTGTATCTC
ACGTTTATCGCTTCATAGTACACTCTATGCGCATTGCCTATTTGATAAAA
AAATTCCCGTACGGAAACCTCTGCTGTCGGTTTGAAAAATCTCAAATCAG
TAAAGACAATGACCCTCTACGGCAATGAATTTTGAAATTAGCCTTAGATA
CTGGGTCTGTGTACAGACAGCCAATGTATGTGTACCAAGCAGAAGAGTGT
TTTGTGTTAACAGTTTTATTTTCCTTTAAATCTTCCAGCTGTGTATAGCC
CTTGCTGATCTATCCATTCAGTCACCGCAATGGGAAAATCCTGTCTCTGA
CCTTATCAAAATGTAAGTGAGCTTTTTTTTGGTTCTCTATATGTTTTCGA
TTTGTTTAATACTTGGGCTTTCTAGGAATATCAGTCAGAAAGAGTGCTAT
AAAGGGTTATTCCATTAAATTTCCATACAGGGGGGGGATTTGAACAAACA
TTTTCAAGGCAAAAAGAGATTCTTAGAAATGGTGGATACCCCCTGGAAAG
TGATAAGATTTTCGAAAGAATCCTTGGAAAAATTAATTTCCTACCTTAAA
AGTGAGGGTGGACGAACTATAATCTGTCTTTTACCCTGGAAATTTTAGAA
TAACCTGGAAAAATGAAAAAATACTCATTTATACCCCCTGGAAACTCTTC
TCCGATTAATACTTCCTGGAAATGTTAGTCCACCTGATTGTATGGATACA
ATGGAATGGCCCAATTTTATAGGTATCTAGTATTATTTTACCTTATATCA
AACCTTTGCTTATCTTACATTTTTTATTCCAGATTTTCTACAAAGCTTGA
ACATTTCTCTGTGTTATTGGAAGTGTTAATGCTGATGCCAGAAGAGGTAA
TGTAAATGTAGCTTTAAAAAGGTTATCCGAAAAAAATTACAATGAATCTT
TTGAATAACAATGTAATCTCAGCCTCATTATATCTCTATCCTCCAGTCAG
AAATTAAAACTGCTTATTTTTGGATGAGGAAGGCCTGGAACTGCTATAGT
GTAGAATATGCAATTTTGATTTGACTATTTATGATTGGATGGATTTTACA
ACGACATTTAACAATAATACGCTAGCAAAGTAGAATTGGTAAGTAGAGTA
TTGGTAATTATATCTACAATCGGTGACGAAATACTTGGCACAAAAAGGAA
ATCCACCTGGCACTGATTGTCTGAGAAACTGAAAAATGCCAAATTCTGAT
CAGCGGGGGGTCTTATTGCTAAGTTTTTAATCAATCTTTCGGGCTCAAAA
TCCCCTTTTCATCAATTTTAGGGGCTAAAACTTGAAAAAAAGTCAAAATT
TTCTGAAATTTGCACGTTTTTGACTTTTCGTAAATTGGACCTTTTCAAAA
AGTTAAATATTTCACAAAAAGTGATTTTGGTCAGAAGCAAACGCTTCAAA
ATGGTAAATTAGCCAAAAGTGCCAATATGTTATGGCACTGATTGTAGAAG
ATTTACACCACATTTTATGTTTCTATTTTTCTAAGGTCGAGAACGAATAT
CTTCACATTGGGAAAAACAGAAGAGAAGAAGTCGTTGTGAAATATCAACG
ATGTTCGCATGAAGTTCTTGATCTGATGGTACGCTCTCTCCCCAGCTCTT
TGATGCTTTCTTCAAGTATTTTTAGTTGCTGTTCTAAAGATACACAGATT
TTAAAGACTGTTATTCTTTCTCATGTTTTCCCAAATCAATAAATGGCCAT
CAAAGACTCCCGAGAACACCCTCTAGTTGAACTATTTTTAAGAAGATTTC
CCTTGATATGGCTAGTTTCCTCAGTTTCTAAATAAGTACAAAGATAGAAC
TAGTGTATATACCTTTTTCACCTTTGCGAAGATGGTTCTTGCGGTTAGTT
GTTGAGATATGTTGTTCATCTTTGGAAACTGTAAATTAAAGAATCACCAT
GATAAATTCTTCAGACGCCCTGAACAAAATATTCCATTTTGAAACTACCA
CCATGATAAAATATTGGCTCAATTTCGGTCAATCTGCTAATTTTTAAAAT
GACTATGGAAATGCTTTTGCTAATCTAATTTTGAATCTAAACATAATTTT
CAAAATTTCGGGATACTAAGAACATCATTCAGAAACTTTTCTTGAAGAAA
AATCGTCTAGGGTACTACATTTTACAACTTTATAGCTTTTTTTTAAGTTT
CAATCACTTTGTTCATTTCCAGCTAAAATGCCACGAGGTTTGCCCTTCAG
ACGATAGAACACAGTGCAAGGTTCGTTTTTTTTATCACCTCTTTCAAACT
CATATCAATATATTTCTTCAGAGAATGTTTTTAATTCTAATCTAGACAGA
ATAACGCATGTGTAACAATTATTTATTGTTTTTTAGCTTTACCAATGTTT
TGGAACTTGGTTGACACTTGGATCATTCCCTGCCCAAGTTGTTGTTGAAA
GTAAATTGTTGAAACTGGCATTTGATACTCTGGTATGCGTAAACTTGATT
TATCTTATTTTTTTACATAAACAATCAGAATTCATTCACTAATGTGTCAT
TGGACTATGCCAGTTACATTAAATATTAAAAAA

Coding sequence (CDS) from alignment at sc0001535:3492..8374-

>TCONS_00036921 ID=TCONS_00036921|Name=TCONS_00036921|organism=Clytia hemisphaerica|type=CDS|length=7803bp|location=Sequence derived from alignment at sc0001535:3492..8374- (Clytia hemisphaerica)
CTTTACCAATGTTTTGGAACTTGGTTGACACTTGGATCATTCCCTGCCCA
AGTTGTTGTTGAAAGTAAATTGTTGAAACTGGCATTTGATACTCTGGTAT
GCGTAAACTTGATTTATCTTATTTTTTTACATAAACAATCAGAATTCATT
CACTAACTAAAATGCCACGAGGTTTGCCCTTCAGACGATAGAACACAGTG
CAAGGTCGAGAACGAATATCTTCACATTGGGAAAAACAGAAGAGAAGAAG
TCGTTGTGAAATATCAACGATGTTCGCATGAAGTTCTTGATCTGATGATT
TTCTACAAAGCTTGAACATTTCTCTGTGTTATTGGAAGTGTTAATGCTGA
TGCCAGAAGAGCTGTGTATAGCCCTTGCTGATCTATCCATTCAGTCACCG
CAATGGGAAAATCCTGTCTCTGACCTTATCAAAATAGTCTCAGAAACTCA
CTGATGCAGCATTTACTGCAGTATTCCCTTGCCTCACATGCAACATTAAC
TCAGATTCAGCATCATTTCTCTGAGCTACCTCAACAACAACATTTGTTGT
ATGCTTGGGAAATTTGTGACCAACTTCTTCGAGAAAACCGTGATAAAGAG
TCACAATATTTTGCTGCACAAACAATGAAAACTAAAAACTTGCTTTCCTA
TCCCGTAAGGAAAGAAAGTAGCTTTATTATAATTACCTCTTCACATTTTT
TTACTCTTCACCTCCATATTGCAGATCTAAATAAAAAAAGCAAAACTGAA
AATATGGAAGCACCAACAATTTCACACGTCTATTCAGCCATTGATACACT
CTATCACTCTAGCCAAGTAGAAGGTAAAGAAGAAGCTTCAAAATGGCTAG
AGAAATTCCAAAAATCGCTTTACCAATGTTTTGGAACTTGGTTGACACTT
GGATCATTCCCTGCCCAAGTTGTTGTTGAAAGTAAATTGTTGAAACTGGC
ATTTGATACTCTGGTATGCGTAAACTTGATTTATCTTATTTTTTTACATA
AACAATCAGAATTCATTCACTAACTAAAATGCCACGAGGTTTGCCCTTCA
GACGATAGAACACAGTGCAAGGTCGAGAACGAATATCTTCACATTGGGAA
AAACAGAAGAGAAGAAGTCGTTGTGAAATATCAACGATGTTCGCATGAAG
TTCTTGATCTGATGATTTTCTACAAAGCTTGAACATTTCTCTGTGTTATT
GGAAGTGTTAATGCTGATGCCAGAAGAGCTGTGTATAGCCCTTGCTGATC
TATCCATTCAGTCACCGCAATGGGAAAATCCTGTCTCTGACCTTATCAAA
ATAGTCTCAGAAACTCACTGATGCAGCATTTACTGCAGTATTCCCTTGCC
TCACATGCAACATTAACTCAGATTCAGCATCATTTCTCTGAGCTACCTCA
ACAACAACATTTGTTGTATGCTTGGGAAATTTGTGACCAACTTCTTCGAG
AAAACCGTGATAAAGAGTCACAATATTTTGCTGCACAAACAATGAAAACT
AAAAACTTGCTTTCCTATCCCGTAAGGAAAGAAAGTAGCTTTATTATAAT
TACCTCTTCACATTTTTTTACTCTTCACCTCCATATTGCAGATCTAAATA
AAAAAAGCAAAACTGAAAATATGGAAGCACCAACAATTTCACACGTCTAT
TCAGCCATTGATACACTCTATCACTCTAGCCAAGTAGAAGGTAAAGAAGA
AGCTTCAAAATGGCTAGAGAAATTCCAAAAATCGCTTTACCAATGTTTTG
GAACTTGGTTGACACTTGGATCATTCCCTGCCCAAGTTGTTGTTGAAAGT
AAATTGTTGAAACTGGCATTTGATACTCTGGTATGCGTAAACTTGATTTA
TCTTATTTTTTTACATAAACAATCAGAATTCATTCACTAACTAAAATGCC
ACGAGGTTTGCCCTTCAGACGATAGAACACAGTGCAAGGTCGAGAACGAA
TATCTTCACATTGGGAAAAACAGAAGAGAAGAAGTCGTTGTGAAATATCA
ACGATGTTCGCATGAAGTTCTTGATCTGATGATTTTCTACAAAGCTTGAA
CATTTCTCTGTGTTATTGGAAGTGTTAATGCTGATGCCAGAAGAGCTGTG
TATAGCCCTTGCTGATCTATCCATTCAGTCACCGCAATGGGAAAATCCTG
TCTCTGACCTTATCAAAATAGTCTCAGAAACTCACTGATGCAGCATTTAC
TGCAGTATTCCCTTGCCTCACATGCAACATTAACTCAGATTCAGCATCAT
TTCTCTGAGCTACCTCAACAACAACATTTGTTGTATGCTTGGGAAATTTG
TGACCAACTTCTTCGAGAAAACCGTGATAAAGAGTCACAATATTTTGCTG
CACAAACAATGAAAACTAAAAACTTGCTTTCCTATCCCGTAAGGAAAGAA
AGTAGCTTTATTATAATTACCTCTTCACATTTTTTTACTCTTCACCTCCA
TATTGCAGATCTAAATAAAAAAAGCAAAACTGAAAATATGGAAGCACCAA
CAATTTCACACGTCTATTCAGCCATTGATACACTCTATCACTCTAGCCAA
GTAGAAGGTAAAGAAGAAGCTTCAAAATGGCTAGAGAAATTCCAAAAATC
GCTTTACCAATGTTTTGGAACTTGGTTGACACTTGGATCATTCCCTGCCC
AAGTTGTTGTTGAAAGTAAATTGTTGAAACTGGCATTTGATACTCTGGTA
TGCGTAAACTTGATTTATCTTATTTTTTTACATAAACAATCAGAATTCAT
TCACTAACTAAAATGCCACGAGGTTTGCCCTTCAGACGATAGAACACAGT
GCAAGGTCGAGAACGAATATCTTCACATTGGGAAAAACAGAAGAGAAGAA
GTCGTTGTGAAATATCAACGATGTTCGCATGAAGTTCTTGATCTGATGAT
TTTCTACAAAGCTTGAACATTTCTCTGTGTTATTGGAAGTGTTAATGCTG
ATGCCAGAAGAGCTGTGTATAGCCCTTGCTGATCTATCCATTCAGTCACC
GCAATGGGAAAATCCTGTCTCTGACCTTATCAAAATAGTCTCAGAAACTC
ACTGATGCAGCATTTACTGCAGTATTCCCTTGCCTCACATGCAACATTAA
CTCAGATTCAGCATCATTTCTCTGAGCTACCTCAACAACAACATTTGTTG
TATGCTTGGGAAATTTGTGACCAACTTCTTCGAGAAAACCGTGATAAAGA
GTCACAATATTTTGCTGCACAAACAATGAAAACTAAAAACTTGCTTTCCT
ATCCCGTAAGGAAAGAAAGTAGCTTTATTATAATTACCTCTTCACATTTT
TTTACTCTTCACCTCCATATTGCAGATCTAAATAAAAAAAGCAAAACTGA
AAATATGGAAGCACCAACAATTTCACACGTCTATTCAGCCATTGATACAC
TCTATCACTCTAGCCAAGTAGAAGGTAAAGAAGAAGCTTCAAAATGGCTA
GAGAAATTCCAAAAATCGCTTTACCAATGTTTTGGAACTTGGTTGACACT
TGGATCATTCCCTGCCCAAGTTGTTGTTGAAAGTAAATTGTTGAAACTGG
CATTTGATACTCTGGTATGCGTAAACTTGATTTATCTTATTTTTTTACAT
AAACAATCAGAATTCATTCACTAACTAAAATGCCACGAGGTTTGCCCTTC
AGACGATAGAACACAGTGCAAGGTCGAGAACGAATATCTTCACATTGGGA
AAAACAGAAGAGAAGAAGTCGTTGTGAAATATCAACGATGTTCGCATGAA
GTTCTTGATCTGATGATTTTCTACAAAGCTTGAACATTTCTCTGTGTTAT
TGGAAGTGTTAATGCTGATGCCAGAAGAGCTGTGTATAGCCCTTGCTGAT
CTATCCATTCAGTCACCGCAATGGGAAAATCCTGTCTCTGACCTTATCAA
AATAGTCTCAGAAACTCACTGATGCAGCATTTACTGCAGTATTCCCTTGC
CTCACATGCAACATTAACTCAGATTCAGCATCATTTCTCTGAGCTACCTC
AACAACAACATTTGTTGTATGCTTGGGAAATTTGTGACCAACTTCTTCGA
GAAAACCGTGATAAAGAGTCACAATATTTTGCTGCACAAACAATGAAAAC
TAAAAACTTGCTTTCCTATCCCGTAAGGAAAGAAAGTAGCTTTATTATAA
TTACCTCTTCACATTTTTTTACTCTTCACCTCCATATTGCAGATCTAAAT
AAAAAAAGCAAAACTGAAAATATGGAAGCACCAACAATTTCACACGTCTA
TTCAGCCATTGATACACTCTATCACTCTAGCCAAGTAGAAGGTAAAGAAG
AAGCTTCAAAATGGCTAGAGAAATTCCAAAAATCGCTTTACCAATGTTTT
GGAACTTGGTTGACACTTGGATCATTCCCTGCCCAAGTTGTTGTTGAAAG
TAAATTGTTGAAACTGGCATTTGATACTCTGGTATGCGTAAACTTGATTT
ATCTTATTTTTTTACATAAACAATCAGAATTCATTCACTAACTAAAATGC
CACGAGGTTTGCCCTTCAGACGATAGAACACAGTGCAAGGTCGAGAACGA
ATATCTTCACATTGGGAAAAACAGAAGAGAAGAAGTCGTTGTGAAATATC
AACGATGTTCGCATGAAGTTCTTGATCTGATGATTTTCTACAAAGCTTGA
ACATTTCTCTGTGTTATTGGAAGTGTTAATGCTGATGCCAGAAGAGCTGT
GTATAGCCCTTGCTGATCTATCCATTCAGTCACCGCAATGGGAAAATCCT
GTCTCTGACCTTATCAAAATAGTCTCAGAAACTCACTGATGCAGCATTTA
CTGCAGTATTCCCTTGCCTCACATGCAACATTAACTCAGATTCAGCATCA
TTTCTCTGAGCTACCTCAACAACAACATTTGTTGTATGCTTGGGAAATTT
GTGACCAACTTCTTCGAGAAAACCGTGATAAAGAGTCACAATATTTTGCT
GCACAAACAATGAAAACTAAAAACTTGCTTTCCTATCCCGTAAGGAAAGA
AAGTAGCTTTATTATAATTACCTCTTCACATTTTTTTACTCTTCACCTCC
ATATTGCAGATCTAAATAAAAAAAGCAAAACTGAAAATATGGAAGCACCA
ACAATTTCACACGTCTATTCAGCCATTGATACACTCTATCACTCTAGCCA
AGTAGAAGGTAAAGAAGAAGCTTCAAAATGGCTAGAGAAATTCCAAAAAT
CGCTTTACCAATGTTTTGGAACTTGGTTGACACTTGGATCATTCCCTGCC
CAAGTTGTTGTTGAAAGTAAATTGTTGAAACTGGCATTTGATACTCTGGT
ATGCGTAAACTTGATTTATCTTATTTTTTTACATAAACAATCAGAATTCA
TTCACTAACTAAAATGCCACGAGGTTTGCCCTTCAGACGATAGAACACAG
TGCAAGGTCGAGAACGAATATCTTCACATTGGGAAAAACAGAAGAGAAGA
AGTCGTTGTGAAATATCAACGATGTTCGCATGAAGTTCTTGATCTGATGA
TTTTCTACAAAGCTTGAACATTTCTCTGTGTTATTGGAAGTGTTAATGCT
GATGCCAGAAGAGCTGTGTATAGCCCTTGCTGATCTATCCATTCAGTCAC
CGCAATGGGAAAATCCTGTCTCTGACCTTATCAAAATAGTCTCAGAAACT
CACTGATGCAGCATTTACTGCAGTATTCCCTTGCCTCACATGCAACATTA
ACTCAGATTCAGCATCATTTCTCTGAGCTACCTCAACAACAACATTTGTT
GTATGCTTGGGAAATTTGTGACCAACTTCTTCGAGAAAACCGTGATAAAG
AGTCACAATATTTTGCTGCACAAACAATGAAAACTAAAAACTTGCTTTCC
TATCCCGTAAGGAAAGAAAGTAGCTTTATTATAATTACCTCTTCACATTT
TTTTACTCTTCACCTCCATATTGCAGATCTAAATAAAAAAAGCAAAACTG
AAAATATGGAAGCACCAACAATTTCACACGTCTATTCAGCCATTGATACA
CTCTATCACTCTAGCCAAGTAGAAGGTAAAGAAGAAGCTTCAAAATGGCT
AGAGAAATTCCAAAAATCGCTTTACCAATGTTTTGGAACTTGGTTGACAC
TTGGATCATTCCCTGCCCAAGTTGTTGTTGAAAGTAAATTGTTGAAACTG
GCATTTGATACTCTGGTATGCGTAAACTTGATTTATCTTATTTTTTTACA
TAAACAATCAGAATTCATTCACTAACTAAAATGCCACGAGGTTTGCCCTT
CAGACGATAGAACACAGTGCAAGGTCGAGAACGAATATCTTCACATTGGG
AAAAACAGAAGAGAAGAAGTCGTTGTGAAATATCAACGATGTTCGCATGA
AGTTCTTGATCTGATGATTTTCTACAAAGCTTGAACATTTCTCTGTGTTA
TTGGAAGTGTTAATGCTGATGCCAGAAGAGCTGTGTATAGCCCTTGCTGA
TCTATCCATTCAGTCACCGCAATGGGAAAATCCTGTCTCTGACCTTATCA
AAATAGTCTCAGAAACTCACTGATGCAGCATTTACTGCAGTATTCCCTTG
CCTCACATGCAACATTAACTCAGATTCAGCATCATTTCTCTGAGCTACCT
CAACAACAACATTTGTTGTATGCTTGGGAAATTTGTGACCAACTTCTTCG
AGAAAACCGTGATAAAGAGTCACAATATTTTGCTGCACAAACAATGAAAA
CTAAAAACTTGCTTTCCTATCCCGTAAGGAAAGAAAGTAGCTTTATTATA
ATTACCTCTTCACATTTTTTTACTCTTCACCTCCATATTGCAGATCTAAA
TAAAAAAAGCAAAACTGAAAATATGGAAGCACCAACAATTTCACACGTCT
ATTCAGCCATTGATACACTCTATCACTCTAGCCAAGTAGAAGGTAAAGAA
GAAGCTTCAAAATGGCTAGAGAAATTCCAAAAATCGCTTTACCAATGTTT
TGGAACTTGGTTGACACTTGGATCATTCCCTGCCCAAGTTGTTGTTGAAA
GTAAATTGTTGAAACTGGCATTTGATACTCTGGTATGCGTAAACTTGATT
TATCTTATTTTTTTACATAAACAATCAGAATTCATTCACTAACTAAAATG
CCACGAGGTTTGCCCTTCAGACGATAGAACACAGTGCAAGGTCGAGAACG
AATATCTTCACATTGGGAAAAACAGAAGAGAAGAAGTCGTTGTGAAATAT
CAACGATGTTCGCATGAAGTTCTTGATCTGATGATTTTCTACAAAGCTTG
AACATTTCTCTGTGTTATTGGAAGTGTTAATGCTGATGCCAGAAGAGCTG
TGTATAGCCCTTGCTGATCTATCCATTCAGTCACCGCAATGGGAAAATCC
TGTCTCTGACCTTATCAAAATAGTCTCAGAAACTCACTGATGCAGCATTT
ACTGCAGTATTCCCTTGCCTCACATGCAACATTAACTCAGATTCAGCATC
ATTTCTCTGAGCTACCTCAACAACAACATTTGTTGTATGCTTGGGAAATT
TGTGACCAACTTCTTCGAGAAAACCGTGATAAAGAGTCACAATATTTTGC
TGCACAAACAATGAAAACTAAAAACTTGCTTTCCTATCCCGTAAGGAAAG
AAAGTAGCTTTATTATAATTACCTCTTCACATTTTTTTACTCTTCACCTC
CATATTGCAGATCTAAATAAAAAAAGCAAAACTGAAAATATGGAAGCACC
AACAATTTCACACGTCTATTCAGCCATTGATACACTCTATCACTCTAGCC
AAGTAGAAGGTAAAGAAGAAGCTTCAAAATGGCTAGAGAAATTCCAAAAA
TCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021808XLOC_021808Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036921-exon-sc0001535-1575043694:8142..8374TCONS_00036921-exon-sc0001535-1575043694:8142..8374Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1575043694:7550..7639TCONS_00036921-exon-sc0001535-1575043694:7550..7639Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1575043694:7147..7188TCONS_00036921-exon-sc0001535-1575043694:7147..7188Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1575043694:6905..6973TCONS_00036921-exon-sc0001535-1575043694:6905..6973Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1575043694:5713..5786TCONS_00036921-exon-sc0001535-1575043694:5713..5786Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1575043694:5179..5242TCONS_00036921-exon-sc0001535-1575043694:5179..5242Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1575043694:4447..4539TCONS_00036921-exon-sc0001535-1575043694:4447..4539Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1575043694:3805..3852TCONS_00036921-exon-sc0001535-1575043694:3805..3852Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1575043694:3492..3688TCONS_00036921-exon-sc0001535-1575043694:3492..3688Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1510915933:8142..8374TCONS_00036921-exon-sc0001535-1510915933:8142..8374Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1510915933:7550..7639TCONS_00036921-exon-sc0001535-1510915933:7550..7639Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1510915933:7147..7188TCONS_00036921-exon-sc0001535-1510915933:7147..7188Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1510915933:6905..6973TCONS_00036921-exon-sc0001535-1510915933:6905..6973Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1510915933:5713..5786TCONS_00036921-exon-sc0001535-1510915933:5713..5786Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1510915933:5179..5242TCONS_00036921-exon-sc0001535-1510915933:5179..5242Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1510915933:4447..4539TCONS_00036921-exon-sc0001535-1510915933:4447..4539Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1510915933:3805..3852TCONS_00036921-exon-sc0001535-1510915933:3805..3852Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1510915933:3492..3688TCONS_00036921-exon-sc0001535-1510915933:3492..3688Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1491911889:8142..8374TCONS_00036921-exon-sc0001535-1491911889:8142..8374Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1491911889:7550..7639TCONS_00036921-exon-sc0001535-1491911889:7550..7639Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1491911889:7147..7188TCONS_00036921-exon-sc0001535-1491911889:7147..7188Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1491911889:6905..6973TCONS_00036921-exon-sc0001535-1491911889:6905..6973Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1491911889:5713..5786TCONS_00036921-exon-sc0001535-1491911889:5713..5786Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1491911889:5179..5242TCONS_00036921-exon-sc0001535-1491911889:5179..5242Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1491911889:4447..4539TCONS_00036921-exon-sc0001535-1491911889:4447..4539Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1491911889:3805..3852TCONS_00036921-exon-sc0001535-1491911889:3805..3852Clytia hemisphaericaexon
TCONS_00036921-exon-sc0001535-1491911889:3492..3688TCONS_00036921-exon-sc0001535-1491911889:3492..3688Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036921-proteinTCONS_00036921-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001535supercontigsc0001535:3492..8374 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.6385	15.25	75.5259	72.1524	50.2325	38.1303	31.883	31.9805	22.6036	25.3568	23.6377	20.6281	18.5462	18.3866	22.0134	28.7433	28.0387	27.7263	11.6745	14.6374	19.5242	19.3328	19.1495	22.105	22.8219	22.9868	18.5289	9.3318	21.4582	20.0884
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001494Importin-beta_N
IPR013598Exportin-1/Importin-b-like
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0008536Ran GTPase binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005488 binding
molecular_function GO:0008536 Ran GTPase binding
Blast
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BLAST of TCONS_00036921 vs. Swiss-Prot (Human)
Match: TNPO3 (Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 3.022e-42
Identity = 97/227 (42.73%), Postives = 138/227 (60.79%), Query Frame = 3 
Query:  129 PTISHVYSAIDTLYHSSQVEGKEEASKWLEKFQKSLYAWEICDQLLRENRDKESQYFAAQTMKTKIQHHFSELPQQQHLSLRNSLMQHLLQYSLASHATLTQLCIALADLSIQSPQWENPVSDLIKIFSTKLEHFSXXXXXXXXXXXXXXNEYLHIGKNRREEVVVKYQRCSHEVLDLMLKCHEVCPSDDRTQCKLYQCFGTWLTLGSFPAQVVVESKLLKLAFDTL 809
            PT+  VY A+  LYH     GKE AS WL + Q+S++AWEI DQLL+  +D ES YFAAQTMK KIQ  F ELP   H SLR+SL+ H+      S   +TQL +A+ADL++Q P W+  V  L++ +S  +     LLE+L ++PEEV +  L IG NRR E++      S  V+ L++ C E   +D++   K+++C G+W  LG   +  +  +KLL L F+ L
Sbjct:    6 PTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVL 232
The following BLAST results are available for this feature:
BLAST of TCONS_00036921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TNPO33.022e-4242.73Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3[more]
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