TCONS_00027382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027382
Unique NameTCONS_00027382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027382 ID=TCONS_00027382|Name=TCONS_00027382|organism=Clytia hemisphaerica|type=transcript|length=2288bp
TGATGAGCAGTAAGGAGACACTCATTGATGTAACATTCTCTGCATTTTCC
ATCTGACGTCTCGTCCCTCTTATAAGTTTGCAAGTAGAAGACAATAGAAA
GCAAAACACAACGGAACAAAGAAAGTGAGTATAAAAGGGAATGGAGAACA
GTGTCCGTTTCACATTATCAAGTCATAACGTGTAAGTAAGGCTGGCTGGA
ACAGCTTAACGCACAGGCACAAAAACCGAAAACTTCATTCTCAAAAAAac
caaaagtctttttttttatttatctcatttttcattcgtttcTTACATCT
TTTTGGATCGCTAAAATGGTTGTTGTACAATTGTTTTGGTGCATTATTTA
TTGTTATTTATTGCAAGCCCACGGAAAAGCCTTACCAAAAAGCTTGACCA
CTGTGAATTATGACAATCCTCTGCACACGGTACCTTGTAATTTCGAGATG
GGAGCCATTTGTGCTGGTTATGAAAGGGATTCAGTATCTCCTGCCAAATG
GTTGATCCAACAAGGAGccacaagttcccaagacactGGCCCATCATTCG
ATAACACACTGGGCAAAGGTCAAAATGGATGGTACATGTACTTGGAAACT
TCCAACCAATTAAGTGGGAAAGTAGCGACGATACAGACAGTGCTTCTGGA
CCACCAAGTCACACAGGGAAAGAAACTATGTTTGAGTTTTTACTATCACA
TGTACGGTCACACTATGGGAGACTTCAACATACACGTTGATGTACCTGAA
GGAAATGGAATGACCAAACATTTCGAGTTGAAGGGAAATCAGAAACAGCG
TGACTGGCAATTCGGAAGGTTCGCCTTTGACACACCACAAAAGCCATTCA
AGATTGTATTCAAAGGGACGACCTCGTTTAGCTATTTTGGAGACATTGGT
TTAGATGATATTGACTTGAAATTGGTTTCAAGTAAAAGCTCATGTGACTT
CTGGCCAACCAATGCTGCCACAACGAACAACAATGCCATTCCCACCCTTC
CTTTGGTAACTATTGGTCCAAATGGAATTCCTCCAGTTGGGAATGGACCA
TCGAAATGCGGTCGCCGTCAAGTACCTGTTGGAAGAATTTTCAATGGCCA
AAACGTGTACGCTGGAAAATGGCCTTGGATGGCTATGGTCTTGCGTCAAC
AAAAGGATGGCACGTACAAGCATATGTGCGGCGGAGCATTGTACGGTGGA
CAATACGTCATCACGGCCGCACACTGTCTTGTGGAAACCAAACGTAACAG
TCACATTCGCGTACGGTTAGGCGCACACCTCCGCAAGGCATCAAACGCAA
ACCAACAAGACTTCGACGTCAGTGCCATCTATATTCACACCGACTACAAG
AAGAAAGCATGGCATGATAATGACATCGCACTTTTGAAGTTGGATAAACC
AGTGATCACGACCGATTATATCCAACCCATTTGTTTGACTGATAATCAAA
TCAATCCTGGCGCAGAATGCGTGGTTACAGgaTGGGGAGAGTTTTGGGCT
CAAAGCAAAGATAGTGAGACCTTCAATTACGCCCATCAGTTGAAAGAAGC
ACGCGTCGAACTCAAATCTATGAACCAGTGCAAGAAGGTGTACCACGATA
GTTTGCTGACCAAGAACATGCTATGTGCAGGTCCATACAATGACAATTTC
GCCGATACGTGCCGTGGCGATTCTGGTGGCCCTTTAATGtgcaaaaataa
tgacaaaagtTGGTCACTAGTTGGAGTGACGAGTTGGGGACACAGTGACG
GATGTGGACAACCCGACAAGTTTGGGGTGTACACCAAGATGTCTGAAACA
TCTTCATGGATCACTCATACAACACTATACCCTCATCTACATCCAACACT
TCATGgggagaaaaagaagaattgagTTTTCTTGATACAACGACGGAATA
ATGAACCACAGAGATGCATTTGAACAATAGAATGACGAAACAAAGACATT
TTGACGATGTGAGGATTTAAATGACGAAAAGAAGTCGACGATGAAAACTG
AGGAGCATTTTAACAATGTTTATGCTTCTAACGATTAAAAATtcttttgg
tgactttttatattaatttcattatcattttaaactttttattataagta
CGAGATAACTTTGACTAACGTTGACcgttttgtaaagttttttttttaat
aatttaagGTTGtgtcgaaaaatgaaaaaaagttcttCTTTAAGCGATAT
CCCGTTCTTTCTTGGCTTTTTTCACAATCTTGAAAAGTTAAGTTtcgaga
aaatgattttttgaccGAATTGAAGTAAAGCTTAAAGA
Run BLAST on NCBI

transcript from alignment at sc0000620:188936..194559+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027382 ID=TCONS_00027382|Name=TCONS_00027382|organism=Clytia hemisphaerica|type=transcript|length=5624bp|location=Sequence derived from alignment at sc0000620:188936..194559+ (Clytia hemisphaerica)
TGATGAGCAGTAAGGAGACACTCATTGATGTAACATTCTCTGCATTTTCC
ATCTGACGTCTCGTCCCTCTTATAAGTTTGCAAGTAGAAGACAATAGAAA
GCAAAACACAACGGAACAAAGAAAGTGAGTATAAAAGGGAATGGAGAACA
GTGTCCGTTTCACATTATCAAGTCATAACGTGTAAGTAAGGCTGGCTGGA
ACAGCTTAACGCACAGGCACAAAAACCGAAAACTTCATTCTCAAAAAAac
caaaagtctttttttttatttatctcatttttcattcgtttcTTACATCT
TTTTGGATCGCTAAAATGGTTGTTGTACAATTGTTTTGGTGCATTATTTA
TTGTTATTTATTGCAAGCCCACGGAAAAGGTACGTTGCTCATTAAATTAT
TCTTcgcatttttttaattcaaagtaAATTTCCGTCAATCTTTGGAAACG
CAGCgttttcaaaaatgagtctACAAAAATGGCAGATTAATCGTTGATCA
AAGGACTAGTCAATCAAAGTCACATGTCAGTCAAAGTGAAGTTGCTACTT
TATAGAACTTCCTTCGAAAATGTTTCCAAAGATTGCAGACTGCCAACCTT
TCCGTCCAAATAGCCAACTGATTCTTTTTACTTCATAAATTCTTTGGGAC
CATTGCTTTTTGCCATTGTGTGTAATTCGGTTTTGAGCCAGATATTTGAA
CCTGATGGTAATCTGCAAGGAGGATAATTGCACTGATGATAAAATCACAT
AGAAGATTTTTCTTGTATAAATATATTTTGTTCCTATGTTACTCTTCTCA
GGACAGATCATTGCCTCATGAAAACGAAGGGTCAAGGGGGTCAAAATTTA
CTAAATAAAAGCAAGGTTTTCAAGTTGCTGTGCAATCGAAAATCCAGACG
TCTGGTATTTCATCCTCTGTACATCCCTATAACGACGTAATCTGCCAAGG
TGAGGACAGGACATGCTGATTTTAACATTCACTGTCATTCTTTTTCATTA
CAGCCTTACCAAAAAGCTTGACCACTGTGAATTATGACAATCCTCTGCAC
ACGGTACCTTGTAATTTCGAGATGGGAGCCATTTGTGCTGGTTATGAAAG
GGATTCAGTATCTCCTGCCAAATGGTTGATCCAACAAGGAGccacaagtt
cccaagacactGGCCCATCATTCGATAACACACTGGGCAAAGGTCAAAAT
GGTATGTATAAATGACCCTCAAATcataagttttgaaattttgtttagtt
aaagtaaaattcttCAGCAAATATAGTAGAATATCTAGGTAAGATTTCGC
AAGGTaaaaatttgctaaaatttaGAAGCGTTGCCCGCAGTGGTCAAGGC
tatcctaaaaattttcaatgagCTTTGACGAAATATTGGGATACTATAAT
GAAGATGTCAACCTCGACTCGAAGGAAGGGGAAGTTGACTTCGTCATCCC
TATTCGAGTCGAATACACAACGTCACAACACTTTATTGACAAGTGGCTTT
TACTCAACTTTTGAATGCGATTAAACAACAAATAGAACAACATGATGCAG
ACAAAATAAACATCAAAATACCGTGACCATTCGTCTAATCTTTCCGTTAC
AAAGAACAGGCAGTGCTGTGGAAAAATCAACCTTAAAAGAAGctgttgaa
aaaagaaattactcTTTCTATCGGCCGTAAAACATAATCTACCTGGTACT
GTATTGCTCAGGATCCCTTATACAATATGGTGATTTTctcaagaaaaaaa
gtttttttcatatgCTATTCCACAAATTTAGGTTTTAAGGTCctcattaa
aagattttctgtatGGCTGCTAATGCGAATACTTGACAGCTACTCAAGGA
AGTTTCGCAAAAATGCTTCACATTCCAGCGTAAGAAAGGTCATTGAGTGG
GTGGTGGGCGTTTTAACCcttcaaaatattcttaaaatcaaaaacatCGA
AATAGTTCTCACGAGCataagcaaaaataaaaaatccatctCGCAACATA
TCTGGTCAAAGTGTACTATACACGACCTGAAATACTATAATAGTAATATA
CTTTTTGCAGGATGGTACATGTACTTGGAAACTTCCAACCAATTAAGTGG
GAAAGTAGCGACGATACAGACAGTGCTTCTGGACCACCAAGTCACACAGG
GAAAGAAACTATGTTTGAGTTTTTACTATCACATGTACGGTCACACTATG
GGAGACTTCAACATACACGTTGATGTACCTGAAGGAAATGGAATGACCAA
ACATTTCGAGTTGAAGGGAAATCAGAAACAGCGTGACTGGCAATTCGGAA
GGTTCGCCTTTGACACACCACAAAAGCCATTCAAGGTAAGCAGTAAAGGT
CTAAAGGTTGGTCTCAACCAGTtaaaaacttgttttgtttacaTTAGTTT
CTGTGACAAAACTCCTTTACTACGTTGTACTTCATCACAGAACTCCCCGT
AACTTACAGAGAATCTGTGTAGTACTGGTGGTATACGTGAGATAAAAAGG
CTAGCACAACGTAAACAATCAACTGCTGTTCGAAAGCAGGAAAATTGGTC
TATCTCCCTTGCAATGTGGTAATGTGCATGCAAGAACATGTTAAAGCCAC
ATGTTTCGCAGAGGAAATATGATCAGTTTTGATAAGGCGTTATTTCACAA
TTTCTTTTGTAGATTGTATTCAAAGGGACGACCTCGTTTAGCTATTTTGG
AGACATTGGTTTAGATGATATTGACTTGAAATTGGTTTCAAGTAAAAGCT
CATGTGACTTCTGGCCAACCAATGCTGCCACAACGAACAACAATGCCATT
CCCACCCTTCCTTTGGTAACTATTGGTCCAAATGGAATTCCTCCAGTTGG
TAGGTTGTTGATCTCTTACTATTACGTAATATCATTACAACAGctaactt
aagggctctgaccatagtgaatttttcataattgccgtgtttaaaatgtg
ttttctgactgatgtaaccaacaaaactatggcatgttatacattttcta
ttagacaaactattcctgaatctgaaaatttaaaaattgcattgaaaaaa
tttgatgaagaagaaaatgaagactttcNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNggtttttcatcaatttttcatctggattttgcttaaaaa
aacagtcataacttttgacacatcttttaagaaaaattttccgcaaaatt
taaaatagttcaatgcTTTGCGGACagaataaagaaattttgaaacacaa
aagttaattacccattaaaactaagcattttttgtaaaagagggtgatgc
aacatattattgacatctttttaaagttcataacctcatttttgcaatta
aattcttaatttctcttaagggattcgattaaaaagcaatttataaaggc
aattctttgttaaaagtgttaaaggaacctgaaatataacttttatgttc
aaataccaaaatccatttttggagtatggtcagagcccttaatgcATGAT
AACTAATAAGGAGGCGACAATAAGGCAATTACAGACTAAGCTTATAATAG
AAGTAGCTAGAACTATTTTTTAAAGGAGAAACTACTTTATTGTTCACAGG
GAATGGACCATCGAAATGCGGTCGCCGTCAAGTACCTGTTGGAAGAATTT
TCAATGGCCAAAACGTGTACGCTGGAAAATGGCCTTGGATGGCTATGGTC
TTGCGTCAACAAAAGGATGGCACGTACAAGCATATGTGCGGCGGAGCATT
GTACGGTGGACAATACGTCATCACGGCCGCACACTGTCTTGTGGAAACCA
AACGTAACAGTCACATTCGCGTACGGTTAGGCGCACACCTCCGCAAGGCA
TCAAACGCAAACCAACAAGACTTCGACGTCAGTGCCATCTATATTCACAC
CGACTACAAGAAGAAAGCATGGCATGATAATGACATCGCACTTTTGAAGT
TGGATAAACCAGTGATCACGACCGATTATATCCAACCCATTTGTTTGACT
GATAATCAAATCAATCCTGGCGCAGAATGCGTGGTTACAGGTTGGTGAAG
CTTTGACATCTTGAAATCTTGATAAAGACTGATCGATGGAAAGAATTATT
ATTTTCCCTTTGACTTTCTATCTATGTGTGTACATTTCtgtgttcaattt
ttttaaggaTGGGGAGAGTTTTGGGCTCAAAGCAAAGATAGTGAGACCTT
CAATTACGCCCATCAGTTGAAAGAAGCACGCGTCGAACTCAAATCTATGA
ACCAGTGCAAGAAGGTGTACCACGATAGTTTGCTGACCAAGAACATGCTA
TGTGCAGGTCCATACAATGACAATTTCGCCGATACGTGCCGTGGCGATTC
TGGTGGCCCTTTAATGtgcaaaaataatgacaaaagtTGGTAAGTAGCAA
TTGAACTACCTGTACCAGAAAGGTTCAGTTTTACTATTCCCTATTAAANA
ATGtgcaaaaataatgacaaaagtTGGTAAGTAGCAATTGAACTACCTGT
ACCAGAATGGTTTAATTTTACTATTCCCTATTAAATCTAGAGAAACGCTT
CTGTATTAAAGAATAGGTAGATGACGGTGCATTcaaggggccatccatat
agtacgtacgcagtgaaggggggagaggaggtttagcaaaagcgtacgtc
tattgtttaaatgacgtcatttctattgttctctgcgtaaaacggggagg
gggtgtcaaatatttggaaaatttttgcgtacgtactatatggacggccc
ccaATAACAAATAATCAATAACAAATGATCCATTTTTAATTATCACAGGT
CACTAGTTGGAGTGACGAGTTGGGGACACAGTGACGGATGTGGACAACCC
GACAAGTTTGGGGTGTACACCAAGATGTCTGAAACATCTTCATGGATCAC
TCATACAACACTATACCCTCATCTACATCCAACACTTCATGgggagaaaa
agaagaattgagTTTTCTTGATACAACGACGGAATAATGAACCACAGAGA
TGCATTTGAACAATAGAATGACGAAACAAAGACATTTTGACGATGTGAGG
ATTTAAATGACGAAAAGAAGTCGACGATGAAAACTGAGGAGCATTTTAAC
AATGTTTATGCTTCTAACGATTAAAAATtcttttggtgactttttatatt
aatttcattatcattttaaactttttattataagtaCGAGATAACTTTGA
CTAACGTTGACcgttttgtaaagttttttttttaataatttaagGTTGtg
tcgaaaaatgaaaaaaagttcttCTTTAAGCGATATCCCGTTCTTTCTTG
GCTTTTTTCACAATCTTGAAAAGTTAAGTTtcgagaaaatgattttttga
ccGAATTGAAGTAAAGCTTAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015412XLOC_015412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027382-exon-sc0000620-1491911889:188936..189314TCONS_00027382-exon-sc0000620-1491911889:188936..189314Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1510915933:188936..189314TCONS_00027382-exon-sc0000620-1510915933:188936..189314Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1575043694:188936..189314TCONS_00027382-exon-sc0000620-1575043694:188936..189314Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1491911889:189939..190136TCONS_00027382-exon-sc0000620-1491911889:189939..190136Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1510915933:189939..190136TCONS_00027382-exon-sc0000620-1510915933:189939..190136Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1575043694:189939..190136TCONS_00027382-exon-sc0000620-1575043694:189939..190136Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1491911889:190996..191270TCONS_00027382-exon-sc0000620-1491911889:190996..191270Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1510915933:190996..191270TCONS_00027382-exon-sc0000620-1510915933:190996..191270Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1575043694:190996..191270TCONS_00027382-exon-sc0000620-1575043694:190996..191270Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1491911889:191598..191784TCONS_00027382-exon-sc0000620-1491911889:191598..191784Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1510915933:191598..191784TCONS_00027382-exon-sc0000620-1510915933:191598..191784Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1575043694:191598..191784TCONS_00027382-exon-sc0000620-1575043694:191598..191784Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1491911889:192785..193225TCONS_00027382-exon-sc0000620-1491911889:192785..193225Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1510915933:192785..193225TCONS_00027382-exon-sc0000620-1510915933:192785..193225Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1575043694:192785..193225TCONS_00027382-exon-sc0000620-1575043694:192785..193225Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1491911889:193343..193574TCONS_00027382-exon-sc0000620-1491911889:193343..193574Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1510915933:193343..193574TCONS_00027382-exon-sc0000620-1510915933:193343..193574Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1575043694:193343..193574TCONS_00027382-exon-sc0000620-1575043694:193343..193574Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1491911889:193984..194559TCONS_00027382-exon-sc0000620-1491911889:193984..194559Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1510915933:193984..194559TCONS_00027382-exon-sc0000620-1510915933:193984..194559Clytia hemisphaericaexon
TCONS_00027382-exon-sc0000620-1575043694:193984..194559TCONS_00027382-exon-sc0000620-1575043694:193984..194559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000620supercontigsc0000620:188936..194559 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.317919	0	0.105815	0	0.253141	0	2.95739	4.16014	30.2811	102.254	102.464	61.3757	64.3894	84.646	23.6877	52.7463	32.3354	48.6216	131.151	164.838	58.15	54.7331	56.84	40.104	25.7725	5.65151	1.07294	1.53841	41.0892	24.3782
Blast
[Close]
BLAST of TCONS_00027382 vs. Swiss-Prot (Human)
Match: PRS33 (Serine protease 33 OS=Homo sapiens GN=PRSS33 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 1.512e-41
Identity = 91/253 (35.97%), Postives = 125/253 (49.41%), Query Frame = 1 
Query: 1084 RIFNGQNVYAGKWPWMAMVLRQQKDGTYKHMCGGALYGGQYVITAAHCLVETKRNSHIRVRLGAHLRKASNANQQDFDVSAIYIHTDYKKKAWHDNDIALLKLDKPVITTDYIQPICL--TDNQINPGAECVVTGWGEFWAQSKDSETFNYAHQLKEARVELKSMNQCKKVYH--------DSLLTKNMLCAGPYNDNFADTCRGDSGGPLMCKNNDKSWSLVGVTSWGHSDGCGQPDKFGVYTKMSETSSWI 1812
            RI  G++   G+WPW A +   Q  G   H+CGG+L   Q+V+TAAHC       +  RVRLGA    +++       V  + +  DY +      D+ALL+L +PV  +  +QP+CL     +  PG  C VTGWG      +          L+  RV L     C  +YH        + ++    LCAG Y     D C+GDSGGPL C  +  SW LVGV SWG   GC  P++ GVYT ++  S WI
Sbjct:   36 RIVGGRDGRDGEWPWQASI---QHRGA--HVCGGSLIAPQWVLTAAHCFPRRALPAEYRVRLGALRLGSTSPRTLSVPVRRVLLPPDYSEDG-ARGDLALLQLRRPVPLSARVQPVCLPVPGARPPPGTPCRVTGWGSL----RPGVPLPEWRPLQGVRVPLLDSRTCDGLYHVGADVPQAERIVLPGSLCAG-YPQGHKDACQGDSGGPLTCLQSG-SWVLVGVVSWG--KGCALPNRPGVYTSVATYSPWI 274
The following BLAST results are available for this feature:
BLAST of TCONS_00027382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS331.512e-4135.97Serine protease 33 OS=Homo sapiens GN=PRSS33 PE=1 ... [more]
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