TCONS_00035432-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00035432-protein
Unique Name	TCONS_00035432-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	465

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00035432-protein ID=TCONS_00035432-protein|Name=TCONS_00035432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
MTEVEVKPEASNVDEGPEAAYAQSDLYADVMQDSKETISNGADGEQPVPG
VQTVFMEYKSYTTTHPKSVEQQEKESKIAANVDYHPRGKQFYVGGLTWWT
TDEQVGNAITQCGIADLISVKFFENRINGQSKGFAMVEVGSEASQKLCME
RLSAHLIHGRNPVVDYVNKQSLTMFENQARKEIPGLAAAEKREDAFNNYS
RKPKPAPVVPQQQAPPQIIAGLPPPGATIVNGPPPFMDPNFIQQPQPPQF
IPHGQIPQGAVIVDAAGNFIQGGLPGQLPPGVVPQGLQPGLPMQAPVRPG
VAPHINPAFINQDQAPPIDPVTGVPLQTAGLNQQDMESMRRNQAVASTAI
QRAMTDANAGEFESGIETLVTAISLIKQSSTANTEPAQVLVQSLQDCLQG
LEGQLVQKGSGGRGGGRYQNDYREHERGDKRRRRDRSRSRSRERGGGNRR
SYSPRRSRSRERRRR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020713	XLOC_020713	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00035432	TCONS_00035432	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 90..165 e-value: 5.3E-8 score: 42.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 92..161 e-value: 1.1E-4 score: 21.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 89..169 score: 10.036
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 89..175
None	No IPR available	GENE3D	3.30.70.330		coord: 52..453 e-value: 1.5E-13 score: 50.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 405..465

Blast

[Close]

BLAST of TCONS_00035432-protein vs. Swiss-Prot (Human)
Match: CPSF7 (Cleavage and polyadenylation specificity factor subunit 7 OS=Homo sapiens GN=CPSF7 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.139e-39
Identity = 131/444 (29.50%), Postives = 194/444 (43.69%), Query Frame = 0

Query:    3 EVEVKPEASNVDEGPEAAYAQSDLYADVMQDSKETISNGADGEQPVPGVQTVFMEYKSYTTTHPKSVEQQEKESKIAANVDYHPRGKQFYVGGLTWWTTDEQVGNAITQCGIADLISVKFFENRINGQSKGFAMVEVGSEASQKLCMERLSAHLIHGRNPVVDYVNKQSLTMFENQARKE---------IPGLAAAEKREDAFN-----------NYSRKPKPAPVVPQQQAPPQIIAGLPPPGATIVNGPPPFMDPNFIQQPQPPQFIPHGQIPQGAVIVDAAGNFIQGGLPGQLPPGVVPQGLQPGLPMQAPVRPGVAPHINPAFI---NQDQAPPIDPV--TGVPLQTAG----------LNQQDMES-MRRNQAVASTAIQRAMTDANAGEFESGIETLVTAISLIKQSSTANTEPAQVLVQSLQDCLQGLEGQLVQKGS 410
            E    PE +N D        Q DLY DV+  + +   + +   +P P V+             P      +  + +        R    YVG  +WWTTD+Q+   I   G+ D++ +KF ENR NGQSKG+A V V SE S    +E L   +++G    V    +Q+L+ FE QARK          IP  A +    D+ +           + +R  KP  V+P    PP   A            PPP +  +F   P PP    H Q     ++           +P   PPG +P  L                H+NPAF    N    PP D       P    G          +++ + E  M+RN+A++S+AI +A++ A+AG++   IETL+TAI++IKQS  AN E  +VL+ SL+DCL G+E +    G+
Sbjct:   15 EFNQDPEFNNTD--------QIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ-----------EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRECVRVPRGGIPPRAHSRDSSDSADGRATPSENLVPSSARVDKPPSVLPYFNRPPS--ALPLMGLPPPPIPPPPPLSSSFGVPPPPPGI--HYQ----HLMPPPPRLPPHLAVP---PPGAIPPAL----------------HLNPAFFPPPNATVGPPPDTYMKASAPYNHHGSRDSGPPPSTVSEAEFEDIMKRNRAISSSAISKAVSGASAGDYSDAIETLLTAIAVIKQSRVANDERCRVLISSLKDCLHGIEAKSYSVGA 412

The following BLAST results are available for this feature:

BLAST of TCONS_00035432-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00035432-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CPSF7	7.139e-39	29.50	Cleavage and polyadenylation specificity factor su...	[more]

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TCONS_00035432-protein (polypeptide) - C. hemisphaerica