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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035432 ID=TCONS_00035432|Name=TCONS_00035432|organism=Clytia hemisphaerica|type=transcript|length=1946bpRun BLAST on NCBI protein sequence of TCONS_00035432-protein >TCONS_00035432-protein ID=TCONS_00035432-protein|Name=TCONS_00035432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp MTEVEVKPEASNVDEGPEAAYAQSDLYADVMQDSKETISNGADGEQPVPGRun BLAST on NCBI transcript from alignment at sc0001312:13279..36262- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035432 ID=TCONS_00035432|Name=TCONS_00035432|organism=Clytia hemisphaerica|type=transcript|length=22984bp|location=Sequence derived from alignment at sc0001312:13279..36262- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001312:13279..36262- >TCONS_00035432 ID=TCONS_00035432|Name=TCONS_00035432|organism=Clytia hemisphaerica|type=CDS|length=12582bp|location=Sequence derived from alignment at sc0001312:13279..36262- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035432 vs. Swiss-Prot (Human)
Match: CPSF6 (Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens GN=CPSF6 PE=1 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 6.502e-30 Identity = 72/165 (43.64%), Postives = 93/165 (56.36%), Query Frame = 2
Query: 188 AAYAQSDLYADVMQDSKETISNGADGEQPVPGVQTVFMEYKSYTTTHPKSVEQQEKESKIAANVDYHPRGKQ--FYVGGLTWWTTDEQVGNAITQCGIADLISVKFFENRINGQSKGFAMVEVGSEASQKLCMERLSAHLIHGRNPVVDYVNKQSLTMFENQARK 676
+ Q DLY DV+ S +G+ P E + Y T P +V + A NV Y GK+ Y+G LTWWTTDE + A+ G+ D++ +KFFENR NGQSKGFA+V VGSEAS K M+ L +HG+NPVV NKQ L+ FE Q+RK
Sbjct: 25 GGHDQIDLYDDVISPSAN------NGDAP---------EDRDYMDTLPPTVGDDVGKG-AAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRK 173 HSP 2 Score: 84.3445 bits (207), Expect = 6.480e-17 Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 2
Query: 1052 PAFINQDQAPPIDPVTGVPLQTAG--LNQQDMES-MRRNQAVASTAIQRAMTDANAGEFESGIETLVTAISLIKQSSTANTEPAQVLVQSLQDCLQGLEGQ 1345
P + D PP G + TA L++ + E M RN+A++S+AI RA++DA+AG++ S IETLVTAISLIKQS + + +VL+ SLQDCL G+E +
Sbjct: 388 PPYDRGDYGPP-----GREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESK 483 The following BLAST results are available for this feature:
BLAST of TCONS_00035432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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