TCONS_00034838-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00034838-protein
Unique NameTCONS_00034838-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length675

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00034838-protein ID=TCONS_00034838-protein|Name=TCONS_00034838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=675bp
MSHGKEENSNDDKPTSIRRTILYCILAVFVLTTFSIGLYYCVEMMKTLRD
DQLKLEERVFDLEKQNKDVYNLMLLMTKSMQNITLKVRQTAENLNSDTYR
THPDNHRTFRERRNINNAPQAIPKGRSENSPQENELQRTIHSFRREMFSL
NDRLRALLRYNDKTDVTGPPGNPGLPGKPGPPGLPGNNGRDGYHGTRGEI
GSQGPEGKQGPLGPPGKDGLNGINGIPGLPGYKGQKGEKGSSGRNGRDGN
NGLPGPMGPTGQNGRQGVRGSKGEPGECGPCYFNFPRAAETIRDEEREQI
QPHVTYTKWGSSNCPVANKLLYSGHIGMSKYRQPNGEYTGSNVVCVPVNS
KRRITKRQIFADLNNEAYSYFLKPRVDKPTKKWESVNKTTEQSEPILKFE
KTNRTTEGSFVDDGKRETTTNETNNESITTKEIEGPTESQTKSSVSNQEI
LGGGKTTGQSPSTSQAISSKTSVHSPTRSQTTRTRRETAVPTESHRKTTT
TSTRETTTATKDTPPRKETSPNAKQQSSSPSRGQGQTNTGNPSPSRQQTT
NDNEYNEEPKYIPKYAGMIGTRKYIPCAVCDVEEQSDQIMIPAQTSCPPE
YEVQYQGYLMNYHHGTQAANIICVNDQALGISPSSDAGIRKIVSKYLSHI
VVDCTTFPCPPLNHAELLKCVVCSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020267XLOC_020267Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00034838TCONS_00034838Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 45..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 399..559
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..136
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 167..222
e-value: 3.9E-9
score: 36.0
coord: 222..277
e-value: 5.5E-9
score: 35.5

Blast
[Close]
BLAST of TCONS_00034838-protein vs. Swiss-Prot (Human)
Match: COLA1 (Collagen alpha-1(XXI) chain OS=Homo sapiens GN=COL21A1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.983e-16
Identity = 58/141 (41.13%), Postives = 69/141 (48.94%), Query Frame = 0 
Query:  163 KTDVTGPPGNPGLPGKPGPPGLPGNNGRDGYHGTRGEIGSQGPEGKQGPL------GPPGKDGLNGINGIPGLPGYKGQKGEKGSSGRNGRDGN------------------NGLPGPMGPTGQNGRQGVRGSKGEPGECG 279
            K  + GP G+PGLPG PG PG PG +G+ GY G  G  G  G  G QG        G PG+DG  G  G+PG PG  G  G KG  G  G  G+                   GLPGP G  G++G+ G+ GS G  GE G
Sbjct:  450 KPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDKGSPGFYGKKGAKGEKGNAGFPGLPGPAGEPGRHGKDGLMGSPGFKGEAG 590
The following BLAST results are available for this feature:
BLAST of TCONS_00034838-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COLA18.983e-1641.13Collagen alpha-1(XXI) chain OS=Homo sapiens GN=COL... [more]
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