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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027339 ID=TCONS_00027339|Name=TCONS_00027339|organism=Clytia hemisphaerica|type=transcript|length=1380bp
ATAGACTAGTAGAATAGATAAAATGACTCTCAAGACTTTTCAAGATGCtt
tgtatttaaaaaagaagctcTAGTCATCAATAATTTGATTcgattttcag
ttttcatttgTATCACACCTTTGATGATGATTTGTGGTTATTTATCGTAT
CTAATGGTCAAACAAAtggatgaaaaagaaaagaaaaaaaacaaaaaagC
AGTGAAGTCTTCAAACAAATTAAAAACCAGAAGAAAAGTTGCAAAAGCTG
ATTGATGTGTTGGAAAATTAGGATTATCAATTATGAAGAAGAAGATTATC
GAGAAATATTTTAAGACATCTTACGAACAAGAATGTCAAAGTCGAGGGTA
CGAAAAATTGTTAGTTATTTATACGAATCAAGAACGTTTTAAAAAAATGC
AATGATTTCAATATAAATTATGCAGGATtacactttttgaaatttatttt
tgtaaattaaagATAGTACATTATGActaattgaactaaaaaagatcatt
tttatttcatttttataccTTTAACCTGTCTCAATTTTTCCATACAAGAC
TCTTTGAACTTTTAGGTATAAGTCATATTcctttttaaaagcattttggA
TTATGAGCGCCAAGTTGTAGTGCTAATCTACTTCCTTATTCGATTAAGAA
TCAGCTACATCTTAATATcaataaaaattcataaattatgACGACATCAT
TTCTTAAACTTTGTTTATATAGTGTGTGATCGATTTTTCACTAATACTCT
ATCATGATAAACCCATAATATTTTGATGTGAGAAATATACTAAAAATTTT
GCGGTAATCGTGATTAAGTGGGTAAAAATTCATCTTCTCCAAATACCTCC
TGGTGTTCCATTTCACAATTGTTTGAAACTACTTTTTGCAGTGATCCATG
AAATTTTGCTACCTTCATGACCCTTTTTCAATCCTCATTACAATGAAAAG
TCTGTCCGAAAAAAGTCCGATCAGAATCTTATACAAATTGAAATCATCCT
CATAATTCATCTCATTTTAtgtagaaaaaattatttttgtctaGTAATAT
TTATAGgtatatgttttttttcgaatgttcttaaagttttaagcttaaaa
atattcttaaattatttgtgcaatttccaaagatattgggtgttttagag
tccatgaAAAGTTTAAATGTTCTTTACTTGCTCTTAAAATTTCGGCCAAC
TAAGCCTGAAGTACTAAACCGGAGAGACTGCAGACTTTACTAAAAACTGA
AAATctagttttgaatttttatttttcatcaaaatttaactaGTCTGTTA
TTAGTGCTTGTTATTGTACTTTGGACATGGAAAAAGTTTTACACACTTTT
AAGTCCCCGAACCTTGTCAGAATGGAGGCT Run BLAST on NCBI transcript from alignment at sc0000616:54487..57652- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027339 ID=TCONS_00027339|Name=TCONS_00027339|organism=Clytia hemisphaerica|type=transcript|length=3166bp|location=Sequence derived from alignment at sc0000616:54487..57652- (Clytia hemisphaerica)
ATAGACTAGTAGAATAGATAAAATGACTCTCAAGACTTTTCAAGATGCTT
TGTATTTAAAAAAGAAGCTCTAGTCATCAATAATTTGATTCGATTTTCAG
TTTTCATTTGTATCACACCTTTGATGATGATTTGTGGTTATTTATCGTAT
CTAATGGTCAAACAAATGGATGAAAAAGAAAAGAAAAAAAACAAAAAAGG
TAATTTTTAAGTTATTTTTTTGTTTTGCTAAAGGTTGATTGTGATCAGAT
CAGATTTGGTGAAAAGTGAAATTGGATCAAAAAAAGAAAACATGTGCATC
TCTAACAAAACTAAAAATGTGTAAAATCTGCAAGATTTCAAAAAAGAGAC
AATTTAAACAAAATAATGAAATTTGATTTTTCTTTACAGCAGTGAAGTCT
TCAAACAAATTAAAAACCAGAAGAAAAGTTGCAAAAGCTGATTGATGTGT
TGGAAAATTAGGTGAATAATTTTTCTTCATTTTACAGAATTTTATGTTTT
TTATATGTTGACCTGATTTATAAAGCATATAGTCATCATTTTCTTGTACA
GTTGTTTTTTGAGGGCTGTTCCTCAACACAACTATAGAGCTTAAGAGGTA
AAAACCATCGCGATCTTATTTCGAGTTAACTTCTGCCAATTGTATTTGAA
CCAACTGGCTGCAAAGTCTTGGATAAATTTTTCGAAATTTTGNTGCCGGA
TAGGCTATTTCCTGGAAATTTAGCTGGACCTCAAACACTGACCCATATTT
ACATGTGCAGGATTATTTTTACTATAGCGTATAAACAAGGCCTTAAATGT
CAAAGAGCTGCCTCTCGAGACATCAGTCAGTTCAATTCACGAATTGAATG
ACAAAATTTGGTTGGTTGATATTCTGATTTTAAGTTTTCAAGTTTTAATT
GATTGTTTTGGGAACTTGAACTTAATTCAGGTAACTCTCATCTGTGTAGA
GATGAGTCTCAACTCTCATCTCATTTTCGATTTTCAAAATACATCCTGTA
GATGACTGATGTTGTTTTTTCTGAAAGCTTGATTTCCTAGTGTGACTAAC
TGTATGAATGATAATAGGTTTTCTTGCCAAACTTATGGCTTATTGGGACA
CGCCATCAAATTTTGGAAAGCATTGTTCTTCATAAATGTCTGTTTTAGTT
AAAACTTCAAGTTAACATCCTCAATTAAATTAATTGTTAATTTAATAGAT
CCAATGACTAGGAAAATAGACTAGTAGAATAGATAAAATGACTCTCAAGA
CTTTTCAAGATGCTTTGTATTTAAAAAAGAAGCTCTAGTCATCAATAATT
TGATTCGATTTTCAGTTTTCATTTGTATCACACCTTTGATGATGATTTGT
GGTTATTTATCGTATCTAATGGTCAAACAAATGGATGAAAAAGAAAAGAA
AAAAAACAAAAAAGGTAATTTTTAAGTTATTTTTTTGTTTTGCTAAAGGT
TGATTGTGATCAGATCAGATTTGGTGAAAAGTGAAATCGGATCAAAAAAA
GAAAACATGTGCATCTCTAACAAAACTAAAAATGTGTAAAATCTGCAAGA
TTTCAAAAAAGAGACAATTTAAACAAAATAATGAAATTTGATTTTTCTTT
ACAGCAGTGAAGTCTTCAAACAAATTAAAAACCAGAAGAAAAGTTGCAAA
AGCTGATTGATGTGTTGGAAAATTAGGTGAATAATTTTTCTTCATTTTAC
AGAATTTTATGTTTTTTATATGTTGACCTGATTTATAAAGCATATAGTCA
TCATTTTCTTGTACAGTTGTTTTTTGAGGGCTGTTCCTCAACACAACTAT
AGAGCTTAAGAGGTAAAAACCATCGCGATCTTATTTCGAGTTAACTTCTG
CCAATTGTATTTGAACCAACTGGCTGCAAAGTCTTGGATACATTTTTCGA
AATTTTGTCCACAGATTTTATGGCCATGTCTCCTGAAGAGTTGACCTGTT
GTTGAACCTTTAGCTATGGAATATTTGAGACTTAAAAAACGATACTATAA
ATTGTAGAGAGACTACAGTAAAATAGTAATACATATTTTTTCTGTTATTT
TCTCAAGGATTATCAATTATGAAGAAGAAGATTATCGAGAAATATTTTAA
GACATCTTACGAACAAGAATGTCAAAGTCGAGGGTACGAAAAATTGTTAG
TTATTTATACGAATCAAGAACGTTTTAAAAAAATGCAATGATTTCAATAT
AAATTATGCAGGATTACACTTTTTGAAATTTATTTTTGTAAATTAAAGAT
AGTACATTATGACTAATTGAACTAAAAAAGATCATTTTTATTTCATTTTT
ATACCTTTAACCTGTCTCAATTTTTCCATACAAGACTCTTTGAACTTTTA
GGTATAAGTCATATTCCTTTTTAAAAGCATTTTGGATTATGAGCGCCAAG
TTGTAGTGCTAATCTACTTCCTTATTCGATTAAGAATCAGCTACATCTTA
ATATCAATAAAAATTCATAAATTATGACGACATCATTTCTTAAACTTTGT
TTATATAGTGTGTGATCGATTTTTCACTAATACTCTATCATGATAAACCC
ATAATATTTTGATGTGAGAAATATACTAAAAATTTTGCGGTAATCGTGAT
TAAGTGGGTAAAAATTCATCTTCTCCAAATACCTCCTGGTGTTCCATTTC
ACAATTGTTTGAAACTACTTTTTGCAGTGATCCATGAAATTTTGCTACCT
TCATGACCCTTTTTCAATCCTCATTACAATGAAAAGTCTGTCCGAAAAAA
GTCCGATCAGAATCTTATACAAATTGAAATCATCCTCATAATTCATCTCA
TTTTATGTAGAAAAAATTATTTTTGTCTAGTAATATTTATAGGTATATGT
TTTTTTTCGAATGTTCTTAAAGTTTTAAGCTTAAAAATATTCTTAAATTA
TTTGTGCAATTTCCAAAGATATTGGGTGTTTTAGAGTCCATGAAAAGTTT
AAATGTTCTTTACTTGCTCTTAAAATTTCGGCCAACTAAGCCTGAAGTAC
TAAACCGGAGAGACTGCAGACTTTACTAAAAACTGAAAATCTAGTTTTGA
ATTTTTATTTTTCATCAAAATTTAACTAGTCTGTTATTAGTGCTTGTTAT
TGTACTTTGGACATGGAAAAAGTTTTACACACTTTTAAGTCCCCGAACCT
TGTCAGAATGGAGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027339-exon-sc0000616-1575043694:57454..57652 | TCONS_00027339-exon-sc0000616-1575043694:57454..57652 | Clytia hemisphaerica | exon |
| TCONS_00027339-exon-sc0000616-1575043694:57192..57263 | TCONS_00027339-exon-sc0000616-1575043694:57192..57263 | Clytia hemisphaerica | exon |
| TCONS_00027339-exon-sc0000616-1575043694:54487..55595 | TCONS_00027339-exon-sc0000616-1575043694:54487..55595 | Clytia hemisphaerica | exon |
| TCONS_00027339-exon-sc0000616-1510915933:57454..57652 | TCONS_00027339-exon-sc0000616-1510915933:57454..57652 | Clytia hemisphaerica | exon |
| TCONS_00027339-exon-sc0000616-1510915933:57192..57263 | TCONS_00027339-exon-sc0000616-1510915933:57192..57263 | Clytia hemisphaerica | exon |
| TCONS_00027339-exon-sc0000616-1510915933:54487..55595 | TCONS_00027339-exon-sc0000616-1510915933:54487..55595 | Clytia hemisphaerica | exon |
| TCONS_00027339-exon-sc0000616-1491911889:57454..57652 | TCONS_00027339-exon-sc0000616-1491911889:57454..57652 | Clytia hemisphaerica | exon |
| TCONS_00027339-exon-sc0000616-1491911889:57192..57263 | TCONS_00027339-exon-sc0000616-1491911889:57192..57263 | Clytia hemisphaerica | exon |
| TCONS_00027339-exon-sc0000616-1491911889:54487..55595 | TCONS_00027339-exon-sc0000616-1491911889:54487..55595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000616 | supercontig | sc0000616:54487..57652 - |
Blast
The following BLAST results are available for this feature:
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