TCONS_00027257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027257
Unique NameTCONS_00027257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027257 ID=TCONS_00027257|Name=TCONS_00027257|organism=Clytia hemisphaerica|type=transcript|length=450bp
CTCATAGTAGTTACAAGTTTGTCACTTCTGAGATGGATTGTGTCTTTGGC
AAAAACTCAGGTTCCTCTCATATCACTGTTAACATAAAAACATCTACGAA
AACGTTAAATGGTCCACAAAGAAAGTCAGGCAATTATTTAATGTCAAAGA
TAAGAACCCATACCCGGCATGCAAAATTTATGAAGGAATTTGCACTTGTG
GAAATAATTATGTTGGAGAAACCGAAAGAAACGTCGAAACCAGATGGGGG
GAACATGAAAACATTGATAAAAACTCTGAACCAGCCAAACACCTGCGTAA
ATTCCCTAATCATCAATTCGTTTGGACGGTTATCTTTAATGCCTCTGAGA
AAACTGGTTTACGGAAGAATTTAGAGGCATCTATCATAGCCCTCAAGAGA
TCGTCTTTAAATGACCAACTTGACTCAAAGCGATTAATTCTTTTCCGAAA
Run BLAST on NCBI

transcript from alignment at sc0000612:143386..144030+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027257 ID=TCONS_00027257|Name=TCONS_00027257|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at sc0000612:143386..144030+ (Clytia hemisphaerica)
CTCATAGTAGTTACAAGTTTGTCACTTCTGAGATGGATTGTGTCTTTGGC
AAAAACTCAGGGTAAGATATGTCTATCTACATATCTAAATTTCAGTAGTA
ATTTACatttaattttcataattacAACCGACATCTTGCTCACATCTATC
CTGAAGaggttttcatcaaaatttgagTTAAACCATTAATGAAGAAGGTT
TATTATTTACAGCttacaaattttttcttaaaggGAATCTCCGGTCTTTT
TTTAAGTTCCTCTCATATCACTGTTAACATAAAAACATCTACGAAAACGT
TAAATGGTCCACAAAGAAAGTCAGGCAATTATTTAATGTCAAAGATAAGA
ACCCATACCCGGCATGCAAAATTTATGAAGGAATTTGCACTTGTGGAAAT
AATTATGTTGGAGAAACCGAAAGAAACGTCGAAACCAGATGGGGGGAACA
TGAAAACATTGATAAAAACTCTGAACCAGCCAAACACCTGCGTAAATTCC
CTAATCATCAATTCGTTTGGACGGTTATCTTTAATGCCTCTGAGAAAACT
GGTTTACGGAAGAATTTAGAGGCATCTATCATAGCCCTCAAGAGATCGTC
TTTAAATGACCAACTTGACTCAAAGCGATTAATTCTTTTCCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015336XLOC_015336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027257-exon-sc0000612-1491911889:143386..143446TCONS_00027257-exon-sc0000612-1491911889:143386..143446Clytia hemisphaericaexon
TCONS_00027257-exon-sc0000612-1510915933:143386..143446TCONS_00027257-exon-sc0000612-1510915933:143386..143446Clytia hemisphaericaexon
TCONS_00027257-exon-sc0000612-1575043694:143386..143446TCONS_00027257-exon-sc0000612-1575043694:143386..143446Clytia hemisphaericaexon
TCONS_00027257-exon-sc0000612-1491911889:143642..144030TCONS_00027257-exon-sc0000612-1491911889:143642..144030Clytia hemisphaericaexon
TCONS_00027257-exon-sc0000612-1510915933:143642..144030TCONS_00027257-exon-sc0000612-1510915933:143642..144030Clytia hemisphaericaexon
TCONS_00027257-exon-sc0000612-1575043694:143642..144030TCONS_00027257-exon-sc0000612-1575043694:143642..144030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000612supercontigsc0000612:143386..144030 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.8109	0.721095	0.205589	1.04121	1.24532	0.366402	0.907007	0.786113	0.861959	0.697542	0.596576	0.679446	0.531367	0.538687	0.641149	0.189854	0.331531	0.442256	0.477568	1.2034	1.28385	0.575334	1.09311	1.2974	0.366073	0	2.05305	0.56368	3.30997	1.12933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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