TCONS_00027273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027273
Unique NameTCONS_00027273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027273 ID=TCONS_00027273|Name=TCONS_00027273|organism=Clytia hemisphaerica|type=transcript|length=510bp
TCCATGTCTCGTAATCTATTTTTCTCGTCGAATGAAAATCCTACATCTTT
AAAGGATAATACTTTGTTGTTTGACGTGACTCCAGTCAACGCGTTTCCAT
TTGCGTCAAAAATTTGCATGTCGAAGTTTTTAAAGGTCGTTTGAGTGGGC
AATTTCCAACTTTGGTATTTAGACGACTCGATTAAGGAAAAGTAACTTCC
GTGTGCGGTGCCATCGTTGAAGATGCAAGCAACGCTTATTCTCGCCGAAA
GGTTGAGATTCGGAATGTGCCATTCGTTTGCGTTCTGGTTATAAATGTAA
TACACTTCGTTTGTAGATCCTTGATCTGGGGAAGAAGGACTCAAATTCAA
ATCATAATCTATGTTCGGAAAATAGATGTTATCCTCTCTAATCGCGTAAT
GGTAATCTTTTTCTATGCTGCCCTTTAGCTTGTAAAAGTGCTTTATTCCG
TCTTCAATATTTTTAGCCAAAGCTTTCCCGCTGTTTTCGAAAATGTTGGT
AGATTGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00027273-protein

>TCONS_00027273-protein ID=TCONS_00027273-protein|Name=TCONS_00027273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
FQSTNIFENSGKALAKNIEDGIKHFYKLKGSIEKDYHYAIREDNIYFPNI
DYDLNLSPSSPDQGSTNEVYYIYNQNANEWHIPNLNLSARISVACIFNDG
TAHGSYFSLIESSKYQSWKLPTQTTFKNFDMQIFDANGNALTGVTSNNKV
LSFKDVGFSFDEKNRLRDM
Run BLAST on NCBI

transcript from alignment at sc0000612:120932..121441

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027273 ID=TCONS_00027273|Name=TCONS_00027273|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at sc0000612:120932..121441 (Clytia hemisphaerica)
CTTTCAATCTACCAACATTTTCGAAAACAGCGGGAAAGCTTTGGCTAAAA
ATATTGAAGACGGAATAAAGCACTTTTACAAGCTAAAGGGCAGCATAGAA
AAAGATTACCATTACGCGATTAGAGAGGATAACATCTATTTTCCGAACAT
AGATTATGATTTGAATTTGAGTCCTTCTTCCCCAGATCAAGGATCTACAA
ACGAAGTGTATTACATTTATAACCAGAACGCAAACGAATGGCACATTCCG
AATCTCAACCTTTCGGCGAGAATAAGCGTTGCTTGCATCTTCAACGATGG
CACCGCACACGGAAGTTACTTTTCCTTAATCGAGTCGTCTAAATACCAAA
GTTGGAAATTGCCCACTCAAACGACCTTTAAAAACTTCGACATGCAAATT
TTTGACGCAAATGGAAACGCGTTGACTGGAGTCACGTCAAACAACAAAGT
ATTATCCTTTAAAGATGTAGGATTTTCATTCGACGAGAAAAATAGATTAC
GAGACATGGA

Coding sequence (CDS) from alignment at sc0000612:120932..121441

>TCONS_00027273 ID=TCONS_00027273|Name=TCONS_00027273|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000612:120932..121441 (Clytia hemisphaerica)
TTTCAATCTACCAACATTTTCGAAAACAGCGGGAAAGCTTTGGCTAAAAA
TATTGAAGACGGAATAAAGCACTTTTACAAGCTAAAGGGCAGCATAGAAA
AAGATTACCATTACGCGATTAGAGAGGATAACATCTATTTTCCGAACATA
GATTATGATTTGAATTTGAGTCCTTCTTCCCCAGATCAAGGATCTACAAA
CGAAGTGTATTACATTTATAACCAGAACGCAAACGAATGGCACATTCCGA
ATCTCAACCTTTCGGCGAGAATAAGCGTTGCTTGCATCTTCAACGATGGC
ACCGCACACGGAAGTTACTTTTCCTTAATCGAGTCGTCTAAATACCAAAG
TTGGAAATTGCCCACTCAAACGACCTTTAAAAACTTCGACATGCAAATTT
TTGACGCAAATGGAAACGCGTTGACTGGAGTCACGTCAAACAACAAAGTA
TTATCCTTTAAAGATGTAGGATTTTCATTCGACGAGAAAAATAGATTACG
AGACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015350XLOC_015350Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027273-proteinTCONS_00027273-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027273-exon-sc0000612-1491911889:120932..121441TCONS_00027273-exon-sc0000612-1491911889:120932..121441Clytia hemisphaericaexon
TCONS_00027273-exon-sc0000612-1510915933:120932..121441TCONS_00027273-exon-sc0000612-1510915933:120932..121441Clytia hemisphaericaexon
TCONS_00027273-exon-sc0000612-1575043694:120932..121441TCONS_00027273-exon-sc0000612-1575043694:120932..121441Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000612supercontigsc0000612:120932..121441 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.376811	0.454607	0.283732	1.09256	1.47634	1.6718	0.392491	0.0783891	0	0	0	0	0	0	0	0.11396	0	0	0	0.126548	0	0	0.172483	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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