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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027236 ID=TCONS_00027236|Name=TCONS_00027236|organism=Clytia hemisphaerica|type=transcript|length=1756bp
cttttattttaccgaccttTCCCGAAAACAACGATTCTTTATATTTGTGT
ATAATGGGCTGCAAATGTTCTGGAATATTTGAGCTATTCACTTCACAAGA
ATTGATGTTTATCGAAAGCAAATTCAGTTCAAGACACGTTTTTCCgctca
aaatgttttttgcaTCTGTGTTGATGACGTAAAAGTCTTCacaaagaaat
ttctttttgttttcaattagtAATTTAACAACTCCCATCAATTTCACGGT
TGATTGCGTAGCAGCGTACGTGATAATTTTCACGtttgttttttgcaatt
tcagttttttgtttttctctctcAGTTTGTCAAAGGTTTTGAAGTTCAAA
ATATTAACTTTGCTCCCTGTATCGGCTAAAAATTCGACTCTGTGCTTCTT
TTCAACAGTCAATTTAACATCAAATAAGTCCTTAACATTTGTAGCATTAA
CGGTTTCGCTTTTCTCAGGTTTCACATCAGACACCGCCCAAACAGACTCC
TCACTCTCGGCCCCCTCACTTTAATAGAAAAGgataataaaataaaagga
agagAAGAAGAGGAACATGTATCGATTGCACTTGTTTTTGCAGCTTTGTT
TTTTCTCATGCAGCATCTTTCGAAATGtccaatctttttaaaaaaattgc
atttctttCCCACTGCGGGGCATCTATTTGAATgtggaaatttaccccca
caGCGGTAANGCACTTGTTTTTGCAGCTTTGTTTTTGCTCATGCAGCATC
TTTCGAAATGTCcaatctttttacaaaaattgcatttctttCCAACTGCG
GGGCATCTATTTGAATGCGGAAATTTACCCCCACAGCGGTAGCATTTCTT
AGTTTTTGAATCTTCTGCAATCGAATCTTTTCCTTTTCTTCCCTGGAATG
GTTTCTTACCGAATCTCCGACcgattttattgatttcttcATCTGTACAC
TTTTTCTTGGAATCGTCAAACACGTCGGTACGAAACTCTGTATCCTCCAA
ATCTTTTCCGTAGACCAGCAATTGTTGCAATGTAAGTTCGGGTTTACGAA
AactatttcttctcaataatgGCATGTTGGTACCATGCTCGATCTGTCGT
TTCAGTTCGACATCAATTTGGTTTCCAAAATCACACTTTAAGGCTTGAGT
ACGTAACCTTCTGTAGTACTGGTGCAGCTTTTCGTTACTCTCTTGATTCA
GCCGTCTGAAGTTGTAAATTTCAACACTGGTATTTGATTGAGGTTTAAAA
TGTGCATCCAGGAGTTGAATAGCGTTGTTTTAGGTTTCCTCTTGACCCGC
AAGTAAACTGTCGTAAATATCATTGACTCTCTCCCCAACGTAGTTCATAA
GCATAGCAAGTTTTTGTTTGTCGTTGCTAACATTTAAGGCAGTGCATAAA
TTCTCGAACCATTTCTTGTATTTGGTCCAACGAATAGCGACCGTAGAAAA
TTCTTCCACATCTAACTGTGGAAAAGCAGTAAACGATACTGTAACAGCAG
CAGGCTCTGTAGACGTagccatttttcaaaataagtaaTGTTCAACGAAC
CATAAATTTATCTTCGTCGCCAAAATAATATTGTAAACACGGTGTGTAAA
GTATATCCTATCTCTTCAATATCCAACTATCAACTCCCATAATATGTACA
AAAGATAAACTCAAAATGTAACGGCGCATGCGTATAAGGAacaatatatA
TCTATTATCTTGTCTCGATGTCTCTGTCTCGATATTTCATCTTCACAATA
CAACAC Run BLAST on NCBI transcript from alignment at sc0000611:187788..190231- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027236 ID=TCONS_00027236|Name=TCONS_00027236|organism=Clytia hemisphaerica|type=transcript|length=2444bp|location=Sequence derived from alignment at sc0000611:187788..190231- (Clytia hemisphaerica)
CTTTTATTTTACCGACCTTTCCCGAAAACAACGATTCTTTATATTTGTGT
ATAATGGGCTGCAAATGTTCTGGAATATTTGAGCTATTCACTTCACAAGA
ATTGATGTTTATCGAAAGCAAATTCAGTTCAAGACACGTTTTTCCGCTCA
AAATGTTTTTTGCATCTGTGTTGATGACGTAAAAGTCTTCACAAAGAAAT
TTCTTTTTGTTTTCAATTAGTAATTTAACAACTCCCATCAATTTCACGGT
TGATTGCGTAGCAGCGTACGTGATAATTTTCACGTTTGTTTTTTGCAATT
TCAGTTTTTTGTTTTTCTCTCTCAGTTTGTCAAAGGTTTTGAAGTTCAAA
ATATTAACTTTGCTCCCTGTATCGGCTAAAAATTCGACTCTGTGCTTCTT
TTCAACAGTCAATTTAACATCAAATAAGTCCTTAACATTTGTAGCATTAA
CGGTTTCGCTTTTCTCAGGTTTCACATCAGACACCGCCCAAACAGACTCC
TCACTCTCGGCCCCCTCACTTTAATAGAAAAGGATAATAAAATAAAAGGA
AGAGAAGAAGAGGAACATGTATCGATTGCACTTGTTTTTGCAGCTTTGTT
TTTTCTCATGCAGCATCTTTCGAAATGTCCAATCTTTTTAAAAAAATTGC
ATTTCTTTCCCACTGCGGGGCATCTATTTGAATGTGGAAATTTACCCCCA
CAGCGGTAANGCACTTGTTTTTGCAGCTTTGTTTTTGCTCATGCAGCATC
TTTCGAAATGTCCAATCTTTTTACAAAAATTGCATTTCTTTCCAACTGCG
GGGCATCTATTTGAATGCGGAAATTTACCCCCACAGCGGTAGCATTTCTT
AGTTTTTGAATCTTCTGCAATCGAATCTTTTCCTTTTCTTCCCTGGAATG
GTTTCTTACCGAATCTCCGACCGATTTTATTGATTTCTTCATCTGTACAC
TTTTTCTTGGAATCGTCAAACACGTCGGTACGAAACTCTGTATCCTCCAA
ATCTTTTCCGTAGACCAGCAATTGTTGCAATGTAAGTTCGGGTTTACGAA
AACTATTTCTTCTCAATAATGGCATGTTGGTACCATGCTCGATCTGTCGT
TTCAGTTCGACATCAATTTGGTTTCCAAAATCACACTTTAAGGCTTGAGT
ACGTAACCTTCTGTAGTACTGGTGCAGCTTTTCGTTACTCTCTTGATTCA
GCCGTCTGAAGTTGTAAATTTCAACACTGGTATTTGATTGAGGTTTAAAA
TGTGCATCCAGGAGTTGAATAGCGTTGTTTTAGGTTTCCTCTTGACCCGC
AAGTAAACTGTCGTAAATATCATTGACTCTCTCCCCAACGTAGTTCATAA
GCATAGCAAGTTTTTGTTTGTCGTTGCTAACATTTAAGGCAGTGCATAAA
TTCTCGAACCATTTCTTGTATTTGGTCCAACGAATAGCGACCGTAGAAAA
TTCTTCCACATCTAACTGTGGAAAAGCAGTAAACGATACTGTAACAGCAG
CAGGCTCTGTAGACGTAGCCATTTTTCAAAATAAGTAATGTTCAACGAAC
CATAAATTTATCTTCGTCGCCAAAATAATATTGTAAACACGGTGTGTAAA
GTATATCCTATCTCTTCAATATCCAACTATCAACTCCCATAATATGTACA
AAAGATAAACTCAAAATGTAACGGCGCATGCGTATAAGGAACAATATATA
TATAGTATAAAGAATAATAATACATCTATTATCTTGTCTCGATGTCTCTG
TCTCGATATTTCATCTTCACAATACAACACCGGGCGAGGGTTCGCCCACT
TGCCAAGTAAACTGCCGTGAGTGGGAATTAAACCTTGATCTCCCGTACAG
GAATCAAGGTTGAAGACCACTGTACCGCGGCACTCTGTCAGTCCAGCCAG
TTGAAGGCAAACCAATNTTGCATGTATCTTTAATTGAGCCGCGTTGAATT
GTGGGATTGCAACTCGTACAAATGTCAAAAAAAGTGAAAAGTAATAATTA
TGACGTATGGGTTGCGGAGCGCTNATCATTGACTCTCTCCCCAACGTAGT
TCATAAGCATAGCAAGTTTTTGTTTGTCGTTGCTAACATTTAAGGCAGTG
CATAAATTCTCGAACCATTTCTTGTATTTGGTCCAACGAATAGCGACCGT
AGAAAATTCTTCCACATCTAACTGTGGAAAAGCAGTAAACGATACTGTAA
CAGCAGCAGGCTCTGTAGACGTAGCCATTTTTCAAAATAAGTAATGTTCA
ACGAACCATAAATTTATCTTCGTCGCCAAAATAATATTGTAAACACGGTG
TGTAAAGTATATCCTAAGATAAACTCAAAATGTAACGGCGCATGCGTATA
AGGAACAATATATATATAGTATAAAGAACAATAATACATCTATTATCTTG
TCTCGATGTCTCTGTCTCGATATTTCATCTTCACAATACAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027236-exon-sc0000611-1575043694:188533..190231 | TCONS_00027236-exon-sc0000611-1575043694:188533..190231 | Clytia hemisphaerica | exon |
| TCONS_00027236-exon-sc0000611-1575043694:187788..187844 | TCONS_00027236-exon-sc0000611-1575043694:187788..187844 | Clytia hemisphaerica | exon |
| TCONS_00027236-exon-sc0000611-1510915933:188533..190231 | TCONS_00027236-exon-sc0000611-1510915933:188533..190231 | Clytia hemisphaerica | exon |
| TCONS_00027236-exon-sc0000611-1510915933:187788..187844 | TCONS_00027236-exon-sc0000611-1510915933:187788..187844 | Clytia hemisphaerica | exon |
| TCONS_00027236-exon-sc0000611-1491911889:188533..190231 | TCONS_00027236-exon-sc0000611-1491911889:188533..190231 | Clytia hemisphaerica | exon |
| TCONS_00027236-exon-sc0000611-1491911889:187788..187844 | TCONS_00027236-exon-sc0000611-1491911889:187788..187844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000611 | supercontig | sc0000611:187788..190231 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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