TCONS_00028176-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028176-protein
Unique NameTCONS_00028176-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028176-protein ID=TCONS_00028176-protein|Name=TCONS_00028176-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp
MAENPEQPPPLERGYDFVLVVKEQGVDFECSICRSILRDAHSTPCHHAFC
RNCLATWTKELEQGNRPITCPNCNLIFDPKKVQYNGFVDRMVKTSLEIKC
KQEDKGCHWQGEIIDYQDHQGTCDYELVECQNKGCREVLSRKELVQHQKD
CKYRTTECLYCRLIKPIIEMKDHHSECQMMKIICPNEQCETQVLRKDIKE
HLNKDCLYEKISCCYSEIGCQKKVERCLMAIHQKDFLVEHQMMIFQDNKK
VQQSLLEKNKQLEDDLKAEKKKNEKLKGEMEVIKKKVENLEQEQQRCNEL
HRNIFSIIDTLIYWVSKGFKSKEKVIKVLGKIQLSHLIKGQYNLLGRIVP
XLSHLIKGQYNLLGRIVPSTPFKFMSFFSTTFVNEKYKCFELKGKEKSFS
RIIFKHVLRDMKFNQMYQTGSFVMVKIRLFLIEREYKVKYVDKKEFTELS
RQANDFRNNNVVFSFQGNRTIFLYHPDISSMNVKICVIRNSRLTSETFAL
NDESCAGDFADCCLEHIDGNEFQFNCHNAEKQFILLVLYT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015947XLOC_015947Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028176TCONS_00028176Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 252..303
NoneNo IPR availableGENE3D1.20.5.340coord: 227..397
e-value: 3.6E-4
score: 19.8
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 27..94
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 30..73
e-value: 9.5E-6
score: 35.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 30..74
score: 12.357
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 29..74
e-value: 3.28997E-5
score: 40.5068
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 138..161
e-value: 3.4E-6
score: 26.6
coord: 162..226
e-value: 4.8E-6
score: 26.2
coord: 92..137
e-value: 1.3E-14
score: 53.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 18..91
e-value: 1.0E-14
score: 53.3
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 30..73
e-value: 1.8E-8
score: 34.0
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 173..232
e-value: 5.9E-13
score: 49.2
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 119..162
score: 10.421
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 173..226
score: 13.262
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 45..54
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 95..168
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 157..229

Blast
[Close]
BLAST of TCONS_00028176-protein vs. Swiss-Prot (Human)
Match: TRAF5 (TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 5.253e-24
Identity = 89/338 (26.33%), Postives = 165/338 (48.82%), Query Frame = 0 
Query:    9 PPLERGYDFVLVVKEQGVDFECSICRSILRDAHSTPCHHAFCRNCLATWTKELEQGNRPITCPNCNLIFDPKKVQYNGFVDRMVKTSLEIKCKQEDKGCHWQGEIIDYQDHQGTCDYELVECQNKGCREVLSRKELVQH-QKDCKYRTTECLYCRLIKPIIEMKDHHSE-CQMMKIICPNEQCETQVLRKDIKEHLNKDCLYEKISCCYSEIGCQKKVERCLMAIHQKDFLVEHQMMIFQDNKKVQQSLLEKNKQLEDDLKAEKKKNEKLKGEMEVIKKKVENLEQEQQRCNELHRNIFSIIDTLIYWVSKGFKSKEKVIKVLGKIQLSHLIKGQYNL 344
            P +E  Y FV  ++E+   ++C+ C S+L + H T C H FC++C+ +    L + N    CP    +   ++V  +    R V  +L + C     GC+ +  +  YQDH   C ++ V+C N+ CRE + RK+L +H    C++R  +CLYC+    +I +++H    C    + CPN  C   +L+ ++ EHL   C   +  C +   GC    +R  +  H+   L EH  ++           LEKN QLE+ +    K  E+ + +++ + + ++ LE+E ++  +L     S +  +  + S   KS     +V   +Q+ +  + +++L
Sbjct:   29 PSIE--YQFVERLEER---YKCAFCHSVLHNPHQTGCGHRFCQHCILS----LRELNTVPICPVDKEVIKSQEVFKDNCCKREV-LNLYVYCSNA-PGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPN-NCAKIILKTEVDEHL-AVCPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLV-----------LEKNVQLEEQISDLHKSLEQKESKIQQLAETIKKLEKEFKQFAQLFGKNGSFLPNIQVFASHIDKSAWLEAQVHQLLQMVNQQQNKFDL 342
The following BLAST results are available for this feature:
BLAST of TCONS_00028176-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF55.253e-2426.33TNF receptor-associated factor 5 OS=Homo sapiens G... [more]
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