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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00027898-protein ID=TCONS_00027898-protein|Name=TCONS_00027898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=401bp
MEVTFKERIEELLVCAICYDCLKQPKTLDCGHMFCRICLESHAIKSEWKI
RCPTCRQEQNSIKRFSCIAQLDAPLYIKQALELIHTYKDNDYPEEEDDIS
DDDSNTMKENNQPEPNGVSYLLEHCYICDEDGHWLNSCPQNDEVKSHDNE
KLKNEDDSERELRVELPEEQLVDFKTDSHKDEHSSGRRAAHEPYDDFILT
QEFTFDKICKKAYKRLKKQKKKLIGGDDDRKGDTKKDSKKSLATVFSERY
LKYQRQQVDLPEYDSKTPGLSKTHLKDASSPGGISSKSSSNSSAAKKPTS
KSMTAAASATGSKYRPSYVPGSLNKTHKSYTMMGYGLPLSGQFGQRQGPR
RRQHQQTASSEQSGSSGCSMDDGSSQFQGAFGKNPFSCSGTKPKVFVALK
F Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 15..55
e-value: 1.2E-7
score: 41.4 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 15..56
score: 12.799 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 15..58
e-value: 1.73697E-8
score: 49.3664 |
| IPR001878 | Zinc finger, CCHC-type | GENE3D | 4.10.60.10 | | coord: 67..156
e-value: 6.4E-5
score: 22.6 |
| IPR001878 | Zinc finger, CCHC-type | PROSITE | PS50158 | ZF_CCHC | coord: 125..140
score: 8.812 |
| IPR001878 | Zinc finger, CCHC-type | SUPERFAMILY | 57756 | Retrovirus zinc finger-like domains | coord: 123..144 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 1..66
e-value: 5.1E-13
score: 48.2 |
| IPR027370 | RING-type zinc-finger, LisH dimerisation motif | PFAM | PF13445 | zf-RING_UBOX | coord: 15..53
e-value: 1.2E-7
score: 31.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 220..240 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 141..189 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 257..321 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 337..388 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 91..114 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 8..59 |
| IPR017907 | Zinc finger, RING-type, conserved site | PROSITE | PS00518 | ZF_RING_1 | coord: 30..39 |
Blast
The following BLAST results are available for this feature:
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