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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027133 ID=TCONS_00027133|Name=TCONS_00027133|organism=Clytia hemisphaerica|type=transcript|length=1949bpRun BLAST on NCBI protein sequence of TCONS_00027133-protein >TCONS_00027133-protein ID=TCONS_00027133-protein|Name=TCONS_00027133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp MYNICCFVPWLALVIQLTMQPIHGIPMGNMKEHVGGGLENVQFYNEMLPDRun BLAST on NCBI transcript from alignment at sc0000607:86022..94438- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027133 ID=TCONS_00027133|Name=TCONS_00027133|organism=Clytia hemisphaerica|type=transcript|length=8417bp|location=Sequence derived from alignment at sc0000607:86022..94438- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000607:86022..94438- >TCONS_00027133 ID=TCONS_00027133|Name=TCONS_00027133|organism=Clytia hemisphaerica|type=CDS|length=13149bp|location=Sequence derived from alignment at sc0000607:86022..94438- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027133 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 119.398 bits (298), Expect = 7.121e-28 Identity = 81/240 (33.75%), Postives = 128/240 (53.33%), Query Frame = 1
Query: 463 EIKSHLNGDVYEEEKEEDSLNNFNDDTNLD---IQHAPLKKLENKRWPNGVVPYVIMSKEYTNEEKRLIRAGLRDIEAVAPCIRFVEYSDGDPNCPNTHVQVFKGLGCWSLIGRTASGKAQKLALDYYCITEDKGVIMHEFLHVLGFYHEQARPDRDEYIRIFWDRLSDGAEPQFR--KTERTDDLGVAYDPVSIMHYPNTAYAKEYGAITMEWKANPKQVLGGD-KLSSKDILQLNRLY 1164
++ ++ D+++ E L+ F D LD I+++ + E RWP+ +PYV+ N + ++ A R + CI F ++ G+ N ++ VFKG GCWS +G GK Q+L++ C + + HEFLH LGF+HEQ+R DRD+Y+RI WDR+ G E F + +D L V YD S+MHY TA+ + ++ + V+G S D+L+LN+LY
Sbjct: 28 DVDGGMDQDIFDI-NEGLGLDLFEGDIRLDRAQIRNSIIG--EKYRWPH-TIPYVLEDSLEMNAKGVILNAFER--YRLKTCIDFKPWA-GETN----YISVFKGSGCWSSVGNRRVGK-QELSIGANC--DRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLY 253 The following BLAST results are available for this feature:
BLAST of TCONS_00027133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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