TCONS_00025713-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00025713-protein
Unique NameTCONS_00025713-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length211

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00025713-protein ID=TCONS_00025713-protein|Name=TCONS_00025713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MPRIDASRLAGGKRKVKSFAYTCSRNTLAAINTIFIFIGLILIGVAAYGK
KQNMLVSLPALGGVIACGVFLLLIAIVGLIGAIRHNQIILFFYMIIMSLL
FIVLLACSVAALAVTEDQRRDLIQTAWKKAPVEAALIEKTYNCCGLTKVS
DTCKMKSNTPCYESIKEPLDRALSVSGGVGLFFSFSLLLAVYLTVRFRNQ
KDPRSNADAFL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014438XLOC_014438Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00025713TCONS_00025713Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 57..83
score: 26.0
coord: 84..112
score: 20.32
coord: 26..49
score: 24.11
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 27..193
e-value: 3.0E-19
score: 69.6

Blast
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BLAST of TCONS_00025713-protein vs. Swiss-Prot (Human)
Match: TSN31 (Tetraspanin-31 OS=Homo sapiens GN=TSPAN31 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.019e-56
Identity = 93/209 (44.50%), Postives = 135/209 (64.59%), Query Frame = 0 
Query:   20 AYTCSRNTLAAINTIFIFIGLILIGVAAYGKKQNMLVSLPALGGVIACGVFLLLIAIVGLIGAIRHNQIILFFYMIIMSLLFIVLLACSVAALAVTEDQRRDLIQTAW----KKAPVEAALIEKTYNCCGLTKVS-------DTCKM--KSNTP----CYESIKEPLDRALSVSGGVGLFFSFSLLLAVYLTVRFRNQKDPRSNADAFL 211
             + CS+N L A+N +++ + L+LIGVAA+GK   ++ S+  +GGVIA GVFLLLIA+ GL+GA+ H+Q++LFFYMII+ L+FI     S + LA+   ++ D+I  +W     K   E   +E++++CCGL  ++       D C    KS +P    C E   +  D AL + GGVGLFFSF+ +L V+L +RFRNQKDPR+N  AFL
Sbjct:    5 GFACSKNALCALNVVYMLVSLLLIGVAAWGKGLGLVSSIHIIGGVIAVGVFLLLIAVAGLVGAVNHHQVLLFFYMIILGLVFIFQFVISCSCLAINRSKQTDVINASWWVMSNKTRDE---LERSFDCCGLFNLTTLYQQDYDFCTAICKSQSPTCQMCGEKFLKHSDEALKILGGVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
The following BLAST results are available for this feature:
BLAST of TCONS_00025713-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN311.019e-5644.50Tetraspanin-31 OS=Homo sapiens GN=TSPAN31 PE=2 SV=... [more]
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