TCONS_00027038 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027038
Unique Name	TCONS_00027038
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2487

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000601:157193..169977+

transcript sequence

>TCONS_00027038 ID=TCONS_00027038|Name=TCONS_00027038|organism=Clytia hemisphaerica|type=transcript|length=2487bp
GAGTTTGTTAAAAAGTTGGTCAGAATTACTGAATCCATTGAAGGTGGTAT
AGTTTTCGAGCAACCCTCTAGATCATCACACAATGAAAGGAACAATACTG
CCAGTTCGGCTAACAATTCAAGTGAGATAATGGCCCGCCAGACAATTGGG
ACGGCCGAAAAAGCCCGCTTAAGCGTTCGTCAATATTTTGACGATTTACG
AGACACTATACAACAACAAGAGAGTGAAGCATTATCAGTCATTAATTTAT
ATGTTCGTGAAAAGCTACATTCTTTAAGGCAACAACAAGAAGACATGGCA
GTGTTGATTTCACAAGTTTCTAATGTTTGTTCGCAATGTGATCGCGCTTT
AAAGAGAAGTGATGCCGAGGTTATCCAGGCTCGATCAAATATCGTCAAAC
TGTTAGACACAGTCCAACAACAGCAACAATTATTCACTGATCTATACGAA
CTTTGTAAAGAAGACCCCACAATCCCTTTCGTTTTTACCAAAGATAATCG
AGTCCACATTGGACAAAAAATGGAAATGAGGGTAGTGGCACTTGGGCTGG
ATAATGGAGGCAAAACGTCCATTTTGTTtaaattgaaacaaaatgaaTTT
GTCTCGACTATTACAACTATTGGTTTCAACGTGGAGACTATCgaacatca
aaacatcaaattcaccaTCTGGGATGTGGGTGGTGTGCAAAAATTACGCC
CTTTGTGGCGCCATTACTACCTCAACACACAAGCGGTCATTTTCGTCATC
GACAGCACTAACTCTGAACGACTTTGTGAAGCACATGACGAACTAGCTAA
GTTACTTGCTGAAAAAAGACTAGAAGATGCGCTCATTCTGATTTATGCAA
ATAAACAGGACCTCCCGAATGCGGTTTCCATGGATACATTAAGCGAACGA
ATCGGAATCCATCGTTTATGTTCTGGACGTACATGGACAATGATTCCGTG
TAGCGCGCACACGGGTGATGGTCTGCAACGTGGTCTTGATTGGCTGGCTA
ATCAATTCCTGTCTGAGTTCAATTCTTGAAGTATACGTTCTTGAAAATCA
CTTCAGGATTTCCAGCTAACATATCAGTAGAAATATCGAACTAGACCTGT
TTGTTATGATGTTGCCACGTGGTGCAAGCTTGGTCTTGATTGGATGCTAG
TCAATGTCCTTCTGAGTTTAATTCTTGAAGTGTTTTATATTCTCATAGAA
GAAATCACATTAAGTTATCCAGCCATTATACCAGTGGAAATGTCGACCTA
GACCTGTTATGATGTTGTCACGTGGTGCAAGCTTGATCTTGATTGGATGA
TAATCAATGTACTTCTGAGTTAAATTCTTGAAGTGATTCAAGATTTCCAG
CCAATATACCAGTAGAAATATTAAACTGGACCTGTTATGATGTTGTCACG
TGGTGCAAGCTTGATCTTGATTGGATGCTAATCAATGTCTGTCCAAAGTT
CGATCTTTGTATCTTAGAAATCATTTCATGATATCCAGAGTTTATACCTG
TGGAAATATCGAATTTGACCTGTTAAGGTTTTAACGTACTGTAGATACAA
GCGTTATCTTGATTAGCATGCTAATCAATGGTAATCAATGCATGTCAGGG
TCCAAATATTGAACTATTTCACATGCTCATACTAAACGCTTCATGATAGC
CAGAGTTCGTTAAAATAGAAGGTTGTATATCAAATTGGACCGATCATGGT
ATGTGACGTAGATGTACGTTTGCATGTTATCAATTGGCTGGCGAACCTGT
TAGAATTCGATTTCCTTTTTTTCGGAACCCCTTgtttattagattttgca
aaaaCTTTGGACCCTTCctcttattcggaccccccctaCTATTCGAGACC
TTAGAGTATTATCTTAATTTTCTTCACATAATTTAGGTGCATTTATTATA
GAGCCATTCCTAGTACTTTGTGTGATGACGTACGTGAAGGGGCCAGTAGC
GTGAGGCgactaaaattcagaatattttgattttagcgcCCCCTatgaaa
aggaaatattttgtaaaaagtaacgcgagcgaagcgagcaccAAAGTTTT
AGGGTATTTTCTCTCTATTTGGCCGAAAACTGCCATATCTGAGGGGTAAA
AGAGTAAAGGGGCGCCGAAAATAATAATTAGAGGCGTCTTTTTGCACCCT
TTgtatttcggcgcccctttgAACGTTACTGGACAGGACCTCTTTTGACG
TAATGGCGTTATTTCATCATTATTTATATTTCATATTGTTTAAATGGGAA
CAACTCCGTATGAAATGTAAACGATTCTACTCTAGTTTAGTTCAATATAA
AAGTATATTAGTgtatttttaaagttatttatttGAGTATTAGAAAATTT
ACCTTTTATCGATAGAATATTCGTTGGCAAAAGATTTCATCAAATGCAAA
TAATTTCGTAGTCCTTCATCTTAAAGAAGaacaaattttgtattttttaa
tttctttccaATTTTGGAATCTTATGATGGTATAAGC

Run BLAST on NCBI

transcript from alignment at sc0000601:157193..169977+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027038 ID=TCONS_00027038|Name=TCONS_00027038|organism=Clytia hemisphaerica|type=transcript|length=12785bp|location=Sequence derived from alignment at sc0000601:157193..169977+ (Clytia hemisphaerica)
GAGTTTGTTAAAAAGTTGGTCAGAATTACTGAATCCATTGAAGGTATACT
TTCGCTTTTCTAGTTGTTGAATTTTTATGATATCTCTCCCTCTCACCCTA
AAGCATNATTTTCGTTTTCGTCTTGCGCTCCCCtgggtatatagaattta
aaggtacatgcacactatagcaaaactgcttcgctcatgtatattcgctt
cgcaaaaatttgCCAGCCTAGAATCTATAATTGGCCAGCCTAGAATCTAT
AATTGTTCAGCCTAGAATCTATATAATTCACCGGACTTAAATTCTCTTTC
GCCAGCCTATCAAAAGAAGCGAATGAAGGCTGGAATAGGCACCGTTAGAA
TTTCTGCTAAAAATTAATAATGTCTTCATAAACAGGGACATTATTTGCTA
GAAAGAGATTTACCTTGACAGAGATCTGCGGCTTTCTTTTCCATTTTATA
TTTTAGAGCTCGTTGATCTCTGTGTAGAACACTGatgtttttttagattt
tatgacTAGAAAACTATTCCTTGACTTTTTGACCAAGAGTCGTAATATCC
TAAATAAGATTTGGTTTCTTgtatgttttatatttttacaattaccattc
atgattaaaaaaaacatttttacctttttcattAAAGCATAtatgttttt
gcatttttaggTGTTTGGggattaaaaaagaattttgcaCTACTCGAACT
CTTAGAACAAATCGAATGTTCAAAAACTATTTTACCGAACGACGAATCAA
ACAAAGAAGATATTTCAAATCTGACCAAATGCGATGAAGATGAAAGTCAC
GTTGCACAACTTTTTTGTACCACGTGTCTAACAAACCTGTGTCGCACATG
CGCAGAAATGATACACAAATCCAAAACATTATCCCAACATTCCATAGTTC
CTAtttctgaaaaaactaaaatcaacCCACCATGTCAACTGCATAGAAGC
CATGTGCTTGAATTCGCATGTTTGGAAGAAAGTTGTCGTGACAATCCCCT
CATGTGTTACACGTGCAAAGACTATGGTGCCCATAAGGGTCATAAACATG
TGCTGATCGAGCTTGAAGCCGACACAATAcgaaaatcaatttcaaatgCT
GTTCTACATGTTAAGACATTCTCAGGAGAAGTTTCAGAGTTTGTTAAAAA
GTTGGTCAGAATTACTGAATCCATTGAAGGTATACTTTCGCTTTTCTAGT
TGTTGAATTTTTATGATATCTCTCCCTCTCACCCTAAAGCATACAAAATG
CGTAAAAAAATTCGTAAAAGGGcacttcttttatttttatgtaaaaGACT
GATATTATAACTTTCTCGATCATGCCACATATGGTGAAAATCTGATTCTA
AAAGTTTCGGGTGGATCTTATTTTACAAGTTAGCAATCCTACATAATTTC
GcgaggtttttttttttcaggaaaagggAAAATTCGTGTAAACAAATCCG
TTAGATATAATTTAGTGTCAGAAAAGGTGCTCAAAAAAAGACAATCGACT
TTCTATGTaagaatttttctcatttttgtctCATTTCAGGTGGTATAGTT
TTCGAGCAACCCTCTAGATCATCACACAATGAAAGGAACAATACTGCCAG
TTCGGCTAACAATTCAAGTGAGATAATGGCCCGCCAGACAATTGGGACGG
CCGAAAAAGCCCGCTTAAGCGTTCGTCAATATTTTGACGATTTACGAGAC
ACTATACAACAACAAGAGAGTGAAGCATTATCAGTCATTAATTTATATGT
TCGTGAAAAGCTACATTCTTTAAGGCAACAACAAGAAGACATGGCAGTGT
TGATTTCACAAGTTTCTAATGTTTGTTCGCAATGTGATCGCGCTTTAAAG
AGAAGTGATGCCGAGGTAAGTTGAAAATATTCCTTCAATTTACTTTCTTG
GTTTGACAATTTACAGTTTTTCCATCCCGGCAAGCCAAAATCTTTCATGG
GAATTCTTTTGAAAGTGATACCTTAACTCTGTGTGCActgtttctatttt
tttgaaaaagttgaaatttttcaaattttttctttttgagactcAAAACT
TAAAGTGACATAAAAGCTGGTAGCTTTTGATATAGAAGATGATTTTGGTA
CCACtggaaagctatttttatactctttctaaaagcGTTTaatttatgcc
cctttaaatcaagttttCAGGAGCTATGGTTTCAAGTCTGAGACTTagta
ttttggcttgttttggacgCATATACGCGTCCCTCGTGGTCTAAGGGTTA
ACAATCATTGAGTTTGAAGAACGGCAGGGGCTAGAGTGGAATCCTCAACC
TTCGTCATGCAATAAAATGACCTGCATTTAGAAATCTTGTGTGAAAACCA
AATGGGCCTCGTGTtaaggatgggaaataagtggcttcatttcccatcca
gtaCTTAGGCATAATGTCGGGTGTCGGGTTTGTGCAAGCCATAAGGGACC
GATTtttacaccctcgaaagtctctcaaagggttacaaaaaaaaacaatt
cacatTCTGAAAGGGtccaaatttctcaaaatttgtgcttACGTGGCGCG
AAACAGAAAAAGgttgtttcttttatttaaaaatgctGAGTAGGCAAATT
GTAGGAGATAATGTCAAATGATGTCTATCTTTTGTCGATGGGTATCAAAA
TATTGTGGAGATCGGCCTTTCatcaattattaaaaaaaaacgataataaa
aattttgaaatgattaTAATAGAggaaaaaaaacactaaaatacacacaa
tttgtattttttgtgttgtgGTTATTGTGACtacacgtgttttttttttt
tataagaacgtcaaaaattttcgaagccttcggatgttNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtttttaagtctccaaagcc
ttagtatgttcttagaatgttcttaaatttttgggctcgaagccttatgt
tcttatatagtttgttcttattaaaaaaaaaacgtgtatgtcttTAGGAT
ATCGTTCAGATATTTCAcgtcatctttgatttttcGTGCTGTGGTTATTG
TGACTATGTCTTTAGGATACCGTTCAGATATTTCACTTCATGATGGCCAG
CATGAGTACTGAATAGTAATTTCgtctaaaataaaattcatatGAAGTTT
TCTCAATTTCCCACCATCGATAACTATCATATTTCTGTCCGAAATATTCC
ATCTCGAGGTACTTTTTTCCATCGGACGGATGTAAGAGAAagactttttc
atcttcacccAATCGTTCATAAAGCCCTTCAACAACTAAATCAAATTGAT
CTTCCTCGTATTCTGTTCCTTCTCGTTTCGATACAAAATCCAAAGTTTTG
TAGCATTGCCTCACATTTTTacgaatcaaaacaaagttttcgtCAACGTA
CTGTACTGTTTATGGTTTTCTAACGTACGCGACATTTCTTCATACCAAGA
TTTGTAACTTTCATTGAAATTATCTCCATTTTCCGCATTGTATTTTGTCA
AAAACTTCTCGAAAAATCGATCAGGTATTGTACTCGATGGCTTCTCCAAA
GCTTGGTATTTAACTTCAAGAATTTCCATCTGATTTTTCAGTGCTTCGAT
CTCATTCTTGAGATCTTGGTTTTCCTTTATCAAGACAGCTTCAGTTGAGC
TTTCAATGACCTTCGCTTTTGTTTTCTCTTGCCGTAACACTTCCATCTGA
TGTTTCAGTGTTTCGATCTCATCCTTCAGAGCTTGGTTTTCCTTTATCAA
GACAGCTTCAGTTGAGCTTTCAATGACCTTCGCTTCTGTTTTCTCCTGAT
GTAACATTTCCATCTGATGTTTCAGTGTTTTGATCTCATCCTTCAGAGCt
tggttttcttcttttagaGTAGTCGAGTTTTTGTCTCCACTTTTCTCTTG
TTGCACCTTCAATTTGGCAATCTCACTGTGATGTTTGAGTGTTTGTATCT
CGTTTTGCATCTcaagaattttaattttgttttccaAAGTCTCTTTTTCA
TATTTAGCTCTCAATTCAGCATTTTCTTGTTTCAGTTTTCGGTTTTCTTC
GAGAATCGTTCGTTCACGATCAACTGAGCTGTGTGTTTCGCTCATATTTG
TTTGCATCTTATCCATACCTCTTTAAACGTTGAAAAAAAACGAATCATAC
AGATAACACCTTACACAAACTCTCTCCTATCATGAATACAAAACTCCATC
TTATATTTTCACTACCCTATATATCTCTTATAATAAGAGAAGCTAATCAG
TAGTATAATGAATAGAGAAAACActggtttatttattcaaaCATCAAGAC
ATCATTACACCATCATTAcataaaataaaagatttttatatATTCTATAT
TATGACGCCTGCCTTGATTACGTGTTATCAACCTCGTAAACAGTTAttca
agttttttataagaacaaactacataagaacaaaTAAGACTTGGATGGCA
AAAGTATTACTgtagttaagaacattttaaggcttcgtggtCTCTAAAAc
aaccgatttcttaggaaattgcacaaaaatactcataaaatggtgaaaat
aaggatattttaagattattttaaggtttaaaacaaaaaaaatgttagGA
ATCCCAAAGGCTTCGAAAATGTTGGActttcgttcttataaaaaatttat
gttttaattTATGTTACGTTTATTTAAAATAATATGACGTTACAGAtgtt
taaaataataaaatgatacAGCGTTATACTATCATGATTAATTTCGACCA
ATCACATAGTTTTTAATAAATATCCACTTATCATACACACATTttcttat
ataagaacaaactatataagaacacgaggcttcgATGAACaaattattaa
gaacaagttaagaacattttgagccTTTGCAAActctaaaatacccaatt
tcgtaggaaaatggacaaaaaaactgaaaaaacgacgaaagtaagaacat
gttaagaacatttttaggcttaaaactcaaaaagttacgTGTACACGTTT
TCTTCGTTAGAACTcggtttataagaacatttatgtCGAAatttaggaaa
gtaaattagaACCCAAACCAAATTAATTGCTCAAAATTATCTGGATTTAA
TTCATAAGAAACTTTCATAATTGAAGTATGTTTTTTTGCTTCTCAACTTT
AAACTAGAGTAATTCTTCGAGTATATTGAAAATGTCAATTCTGCAGATTG
ATGAAATacgcttttttcttttataagaaaaatcaggctaaaaataagaa
caatttaagaacaattttgagcctgaaattactcaatttcaagcaattta
ggatTCAAAGTAATCAAAATTGGGTATaatgcctaaaatacctcaattaa
ttctataaataagaacaggatacacgttttttataagaacatctaacaTC
CAAAAGTTCTTGAAGGCTTCGgattttcttagatttttttagttttaagc
ctaaagatgttcttaacatgttcttattctcACAATTTTCTGAGTATTTT
CGTCCATTTTCCATAGAACTCGATTGTTTAAGattccacaaagccttaaa
tttttcttaacttgttcttaacattttggccctcgaagccttatcttctt
atatagtttgttctaataaaagaaaggtgtaagaagttaagaacaatttg
aggctcaaaacgGCAAAAAAACAAGAACAGTGGAGCCTCAACAAAatact
agttcttataaaaaaagttcaatgttcatcattatcattattattttgCC
TTTATGAAACGAAACAGTTTTCcatgattgattaattttcaacaaaatgt
aTGTACGTATGTATATAAGTAACAATTTAATactaaatttaaaatcaaaa
cgaaTTCAAACAATCGTCTAAagaggccccccccagcggtttgcgtgatg
gcgtgattgggacttttttcttgcgtgatggcgtgattagagattttttt
tggcgtgatggcgtgatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttggcgtgatggcg
tgatcaagattttggcgtgatgcgtgatagggcaaaaatttgaggcgtga
tgcgtgatttgggctatttttcgctatttttcgctattttttgcgtgatg
acaaattttagcgattttcgtgatgcgtgatagagaaaatttttttgcgt
gatggcgtgattaggggtgccgctggggggggcctctCTAAATATCAATC
CTTCTGAGTTCTGATATAGTAATGTTTAATTTAATCCATGCCATTTAATG
TGTTTGACATATCTGATTACCATGATTTAAAAGAGTAAAGTTCAGGGAAA
TTCTTAGGATCATAATGTTCCTTCCATCAATCtcattgtttgatttcttt
aaaAGCACATAGAGAACATTTTCAAACTGTGTCTGACCATGGTCTGAATT
GCGTGTTTGTACCTCATTCATTTTCTGCCGAGGCTCCCCAGTTCTTTTGT
TTCGTCATTCAGAAGTTATAAAGCTCccattttagtgtttttatattttc
ttcatgagtttgttttcatcttttaaaagtCTTCCAGTCGAGCTTTgatt
tatgcaataattaagccGCGCGCCTCGGTCGCGCGGTCGGGTAACGGCTT
TAAAAGACTTTACTGATGCGACCTCGGTTTTCTTTCTCCATTTAGTCAAT
TTAAGTGCTTACATCCCATCTTTGAGAGCTTAAAAATCTCTCTCTTTAAA
TCGAAGCAATATCTTCCGAGCTTTTCAACACACGTTTTCTCCTGTGTTGC
GCTTTACAATTTTACAACCTCCACCGGACGTTTAAGTAATTGTACCTTGT
TTCTCTGTTAGcttaattttcatcttttttcatAAAGTTCTTTCAGTTTG
GCTTTTAACGTTGTTCGTTTTGTTTTTTCCTGAAGCGCCTTCAATTTGGT
TATTTCCATCTGATGTTTCATCCTCTCTATCTCTTTCTgcatttcaagaa
atttaatcTTCTTTTCCAAAGTTTCTTCATATTTTGCTCTTAATTCAGCG
ATTTCTTGTTTCAGTTGTTGGTTTTCTTCATAAATTATTAGTTCACGATA
ACGATCACAATAAACTTGGCTAAGTACTGGATTCataattattttgttaa
aaacctgaaaaacttCAACTCTTCTAGTCAAGTGGCTTACCTCtcaaata
aacaacaaaatacTGCAAATTGTTTAGGAGCtctctgaaattttgcacat
ttactttgaaaaacaaaattcttCGCATATGCATTCTAGTTATGTAACAG
AGGCATCATCGAATATTCTAATTtatataataattataattttctCCAAA
CATCAAGAGAATActtaaaattgttgtttttccATGTTCCTACGCGacag
gttttttataagaacaaaatattaaaaaaaaaagattttaagaacaCATG
AAGAACATTTCAAAATCATAGGCTTTGCAAACTCTAATACATGTAATACT
GTATTATTATTAGAAAATCATACCAAAATATTCACATACACGTTTTGTGa
gcaattttgtccattttcttaagaaactgGGAGTTTtggagtccccaaag
ccttataatgttcttaatttgttcttaacatttttgtcaTCAAAGCTTtt
tgttcttatacagtttgttcttataaaaaaacgtgttctatcataaaatc
ataaaatactcacataatgagaaataagaacactttaagaacactttaag
aacatttctattACACGCCAATTCATGTTTGGTGCGCACTTGAAATATTT
CGAATcaattggataaatatttcaGAAATTTGTTTGTGCAATGTTATGTA
ATTTTACGCTGCATTTACATTacataattttattttcaatttcattcgAG
CAATTATTGAGAGAAAATCAATTTCTATCTATTTCGCActtatttataag
aatgatttcataaaaaaatatagatATGAATTAAGTTCCGTTTTTTTTCA
GACAATCTGATGCCCAGGtttacaatttttaattttgactttcAGTCCTT
GATAGGTTTGAGTTTACAAACAGAACAGCCCAGTCCCAGTCAGATTTTTG
ACTCTCTTAAAGGAACGTgagttttttttagaaatgcGAGACTATGTATG
GTATAGCGTAGCTTTGGTAATCTGAGCTGGTGGCAAGCAACTGAAAGAAA
GTAAATATGTCATTTCACCCACTCTTCTTTAaaaaccctggaccaagcta
tatccgccatctttgatcggagttttttttttgaaagtggctAACGACGG
CGCTTCGTCACTTGTTTGCAagagatctagcgctctcgatacGGGCATTG
CTTCCAAACAAACTCCGATCAAAACATTTTGCTTCGCCGGGATTAAAAAA
CTACTTGCAGGGTCTATATAAAAGCTCGGCGTGGTTTCACCTCAGTACTT
GATCACCCCGATAATGCACAAATAGAAAAGAAAGAGTACAAACCCTTTCT
GTCCCGACTTCATCGTCAGCCATAAGATGAATGAATACACTCCATGAACT
TGAAAAAGATATGTAAGAGGTCGAAATATCTTTACAAAAAGTTATCTCTT
TAGAGGTAATCCAGACTCATTCAAATGTCTTCAAAATTATTAGACACAGT
TCAACATTAGCCTGGGTGTACTTTATCATGTCTCTTTCTTTCTTAATTTA
GGTCATCCAGGCTCGATCAAATATTGTCAAGTTATTAGACACAGTTCAAC
ATTAGCCTGTGTGTAGTGTAATTTTTCATTCTCTTTTTTAATTTAGGTCA
TCCAGGCTCGATCAAATATCGTCAAGTTATTAGACACAGTTCAACATTAG
CCTGTGTGTAGTGTAATTTTTCATTCTCTTTTTTAATTTAGGTCATCCAG
GCTCGATCAAATATCGTCAAGTTATTAGACACAGTTCAACATTAGCCTGT
GTGTAGTGTAATTTTTCATTCTCTTTTTTAATTTAGGTCATCCAGGCTCG
ATCAAATATCGTCAAGTTATTAGACACAGTTCAACATTAGCCTGTGTGTA
GTGTAATTTTTCATTCTCTTTTTTAATTTAGGTCATCCAGGCTCGATCAA
ATATCGTCAAGTTATTAGACACAGTTCAACATCTATTAGCCTGTGTGTAG
TGTAATTTTTCATTCTCTTTTTTAATTTAGGTCATCCAGGCTCGATCAAA
TATCGTCAAGTCATTAGACACAGCTCAACATTAGCTTGTGTGTAGtgtaa
tttttcattctttcttAATTTAGGTTATCCAGGCTCGATCAAATATCGTC
AAACTGTTAGACACAGTCCAACAACAGCAACAATTATTCACTGATCTATA
CGAACTTTGTAAAGAAGACCCCACAATCCCTTTCGTTTTTACCAAAGATA
ATCGAGTCCACATTGGACAAAAAATGGAAATGAGGGTAGTGGCACTTGGG
CTGGATAATGGAGGCAAAACGTCCATTTTGTTtaaattgaaacaaaatga
aTTTGTCTCGACTATTACAACTATTGGTAAGAATTGTACCTTTTTTGTTC
GAATAAACGAGGCCAATTCCTGAATTTTcaggaaataaaataaaaaacaa
tacaTCAAATCcttctttttttcgatttcgattttcgattttcataaAAC
TCTTCAACCTTTTAGAATTATATCCATATTGATAATATCTTTACAACGGT
TTTTATAACTTTGAAACATAGCATAATACATGCCGAGGTTTTAACAAGta
aagtgtccacatacttttgagagAGAGTTAAATGTGTAAAGGAATATGAT
TTTGCTGGTTGTATTTATTTAACGATTTTCTAATTGCTTTATGATCATTT
TTAAAAGGTTTCAACGTGGAGACTATCgaacatcaaaacatcaaattcac
caTCTGGGATGTGGGTGGTGTGCAAAAATTACGCCCTTTGTGGCGCCATT
ACTACCTCAACACACAAGGTAAGGGTTGATTTAACCTTTTATGTAGAGGG
GTGTCTTTCgtgggggcgtttaaaagaaggggacgtttattcgaagtaat
acggtgcTCTTAGGTGCCTAGGTGATAAACGTCCCCCTCCCCCCGCttga
taattttttgattttctcaaccCCCGgttcttattaggaccccccccccc
ggcctttaatttttgaaaatatttttagcttttatTTTGCCCTAAATAGC
CAGGTCTATAGTCTAcaattaccttattttgggggaTATTTGGAGacgta
caatttccaacccctaCGTAATAAGGTCCCCCTGTTTATTAGATATTCTA
ACCTGCCCCGTTTATTCCGACCTTATATTCACCTGAGAGTatataaattt
taatttatcctaaaaagttcaaagaaaatttaagaTATACACCAATCTAC
CTAGAAACGACTCTTCTCTCACCCGTCCCTTGATGACatttattttactt
taatttacttttgcTTATATTTTTTGCAGCGGTCATTTTCGTCATCGACA
GCACTAACTCTGAACGACTTTGTGAAGCACATGACGAACTAGCTAAGTTA
CTTGCTGAAAAAAGACTAGAAGATGCGCTCATTCTGATTTATGCAAATAA
ACAGGTAATGGAAGGAGTTAGAAACttcaaatcaatatttttttctttgt
caactCTCTCGATTTCAGACCTGATCTTTTAAATTCATGTTCTTTGTGAC
GTAATGCTtcatacggaagcacccaaggTAACCTGGGCGTTTGTCAttag
ttttattgtttcaatTCAAAATTACTGGCAAACccctttttgatgttttt
gtttaaaacattaCGCCACGAATATCACGTAATAtcatttatataaaaat
ttgtccgcttttttggGGAGAAACTGAATAGATTCCTTCTGCGTTTTGAG
TATTTGAGACTCCATTTATCTTTAACTTTTGCTTTCAACCTTCTTTTGTT
TCTTAGGACCTCCCGAATGCGGTTTCCATGGATACATTAAGCGAACGAAT
CGGAATCCATCGTTTATGTTCTGGACGTACATGGACAATGATTCCGTGTA
GCGCGCACACGGGTGATGGTCTGCAACGTGGTCTTGATTGGCTGGCTAAT
CAATTCCTGTCTGAGTTCAATTCTTGAAGTATACGTTCTTGAAAATCACT
TCAGGATTTCCAGCTAACATATCAGTAGAAATATCGAACTAGACCTGTTT
GTTATGATGTTGCCACGTGGTGCAAGCTTGGTCTTGATTGGATGCTAGTC
AATGTCCTTCTGAGTTTAATTCTTGAAGTGTTTTATATTCTCATAGAAGA
AATCACATTAAGTTATCCAGCCATTATACCAGTGGAAATGTCGACCTAGA
CCTGTTATGATGTTGTCACGTGGTGCAAGCTTGATCTTGATTGGATGATA
ATCAATGTACTTCTGAGTTAAATTCTTGAAGTGATTCAAGATTTCCAGCC
AATATACCAGTAGAAATATTAAACTGGACCTGTTATGATGTTGTCACGTG
GTGCAAGCTTGATCTTGATTGGATGCTAATCAATGTCTGTCCAAAGTTCG
ATCTTTGTATCTTAGAAATCATTTCATGATATCCAGAGTTTATACCTGTG
GAAATATCGAATTTGACCTGTTAAGGTTTTAACGTACTGTAGATACAAGC
GTTATCTTGATTAGCATGCTAATCAATGGTAATCAATGCATGTCAGGGTC
CAAATATTGAACTATTTCACATGCTCATACTAAACGCTTCATGATAGCCA
GAGTTCGTTAAAATAGAAGGTTGTATATCAAATTGGACCGATCATGGTAT
GTGACGTAGATGTACGTTTGCATGTTATCAATTGGCTGGCGAACCTGTTA
GAATTCGATTTCCTTTTTTTCGGAACCCCTTgtttattagattttgcaaa
aaCTTTGGACCCTTCctcttattcggaccccccctaCTATTCGAGACCTT
AGAGTATTATCTTAATTTTCTTCACATAATTTAGGTGCATTTATTATAGA
GCCATTCCTAGTACTTTGTGTGATGACGTACGTGAAGGGGCCAGTAGCGT
GAGGCgactaaaattcagaatattttgattttagcgcCCCCTatgaaaag
gaaatattttgtaaaaagtaacgcgagcgaagcgagcaccAAAGTTTTAG
GGTATTTTCTCTCTATTTGGCCGAAAACTGCCATATCTGAGGGGTAAAAG
AGTAAAGGGGCGCCGAAAATAATAATTAGAGGCGTCTTTTTGCACCCTTT
gtatttcggcgcccctttgAACGTTACTGGACAGGACCTCTTTTGACGTA
ATGGCGTTATTTCATCATTATTTATATTTCATATTGTTTAAATGGGAACA
ACTCCGTATGAAATGTAAACGATTCTACTCTAGTTTAGTTCAATATAAAA
GTATATTAGTgtatttttaaagttatttatttGAGTATTAGAAAATTTAC
CTTTTATCGATAGAATATTCGTTGGCAAAAGATTTCATCAAATGCAAATA
ATTTCGTAGTCCTTCATCTTAAAGAAGaacaaattttgtattttttaatt
tctttccaATTTTGGAATCTTATGATGGTATAAGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015188	XLOC_015188	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000601	supercontig	sc0000601:157193..169977 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.000117899	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7.35721e-07	0	0	0

Blast

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BLAST of TCONS_00027038 vs. Swiss-Prot (Human)
Match: TRI23 (E3 ubiquitin-protein ligase TRIM23 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 2.145e-106
Identity = 179/339 (52.80%), Postives = 242/339 (71.39%), Query Frame = 1

Query:    1 EFVKKLVRITESIEGG-IVFEQPSRSSHNERXXXXXXXXXXXEIMARQTIGTAEKARLSVRQYFDDLRDTIQQQESEALSVINLYVREKLHSLRQQQEDMAVLISQVSNVCSQCDRALKRSDAEVIQARSNIVKLLDTVQQQQQLFTDLYELCKEDPTIPFVFTKDNRVHIGQKMEMRVVALGLDNGGKTSILFKLKQNEFVSTITTIGFNVETIEHQNIKFTIWDVGGVQKLRPLWRHYYLNTQAVIFVIDSTNSERLCEAHXXXXXXXXXXXXXXXXILIYANKQDLPNAVSMDTLSERIGIHRLCSGRTWTMIPCSAHTGDGLQRGLDWLANQFLS 1014
            ++ +KLV I + IEGG  + E     +H E                    GTAE AR  +R YF DL +T+ +QE  ALSV++ +VREKL  LRQQQEDM +L+S+VS  C  C++ L++ D  V+ A+  I +LL+T+Q+QQQ FT++ +  + D +IP  FTKDNRVHIG KME+RVV LGLD  GKT+ILFKLKQ+EF+  I TIGFNVET+E++N+KFTIWDVGG  KLRPLW+HYYLNTQAV+FV+DS++ +R+ EAH ELAKLL EK L DAL+LI+ANKQD+  A+S++ ++E + +H+LC GR+W +  C A +G GL  GLDWL+ Q ++
Sbjct:  246 DYSRKLVGIVQHIEGGEQIVEDGIGMAHTE-----------------HVPGTAENARSCIRAYFYDLHETLCRQEEMALSVVDAHVREKLIWLRQQQEDMTILLSEVSAACLHCEKTLQQDDCRVVLAKQEITRLLETLQKQQQQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 567

The following BLAST results are available for this feature:

BLAST of TCONS_00027038 vs. Swiss-Prot (Human)

BLAST of TCONS_00027038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TRI23	2.145e-106	52.80	E3 ubiquitin-protein ligase TRIM23 OS=Homo sapiens...	[more]

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TCONS_00027038 (transcript) - C. hemisphaerica