TCONS_00023688-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023688-protein
Unique NameTCONS_00023688-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023688-protein ID=TCONS_00023688-protein|Name=TCONS_00023688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MQVAIHFLVQSFISSSVVVKSACGVIVTAYLIGLIPNAYGVLSITPALLL
PPNFQVWTLVTGLVVERSIINVLINLPAIILCGQHLEPLWGALELLKFIT
ITSVGTALMTSFVSLAAYAITHRFTFWAVQFSGMAGVLGGLTVAFKQLRP
DQRFNMKYKELRVHDLPISCIIIFTLLAIFRLLPYTQPIMMACGVIVGWT
YLRFYQSHGKGMRGDMSEGFSAATLLPTPIRPAASVLSDILYRILVRFGL
CQNPVRTYDVGGPSSITISLPGSDPADAERRRKKALRALNERLTQMQQKS
SQQEMETIDGWPLLENESTPSSTPSASVSETNNKESHENEADSDSDKNSQ
ESFVKVPKGTDSDSISD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013303XLOC_013303Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023688TCONS_00023688Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013861DUF1751_Mem_euk
IPR022764Peptidase_S54_rhomboid_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006890retrograde vesicle-mediated transport, Golgi to ER
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004252 serine-type endopeptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 276..306
NoneNo IPR availableSMARTSM01160DUF1751_2coord: 46..147
e-value: 6.6E-37
score: 138.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 311..367
IPR013861Transmembrane protein DUF1751, eukaryoticPFAMPF08551DUF1751coord: 55..147
e-value: 3.5E-23
score: 81.9
IPR022764Peptidase S54, rhomboid domainGENE3D1.20.1540.10coord: 14..208
e-value: 1.2E-14
score: 54.2
IPR022764Peptidase S54, rhomboid domainSUPERFAMILY144091Rhomboid-likecoord: 22..205

Blast
[Close]
BLAST of TCONS_00023688-protein vs. Swiss-Prot (Human)
Match: TM115 (Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.915e-68
Identity = 119/294 (40.48%), Postives = 183/294 (62.24%), Query Frame = 0 
Query:   14 SSSVVVKSACGVIVTAYLIGLIPNAYGVLSITPALLLPPNFQVWTLVTGLVVERSIINVLINLPAIILCGQHLEPLWGALELLKFITITSVGTALMTSFVSLAAYAITHRFTF-WAVQFSGMAGVLGGLTVAFKQLRPDQRFNMKYKELRVHDLPISCIIIFTLLAIFRLLPYTQPIMMACGVIVGWTYLRFYQSHGKGMRGDMSEGFSAATLLPTPIRPAASVLSDILYRILVRFGLCQNPVRTYDVGGPSSITISLPGSDPADAERRRKKALRALNERLTQMQQKSSQQEME 306
            S+SVVVK+ C  ++  YL+    +  G L++TP  L PPNF +WTL T  ++E+ + +V I+L  +++ G+ LEPLWGALELL F ++ +V   L+ +F  L  Y  +    + + V+  G  G LGG+ VA KQ   D    ++  ++RV  +P+  + +  LL +  LL          G++  W YLRFYQ H +G RGDM++ F+ AT  P  ++P   +L+++++ +LV+  +CQ  V+ YDVG PSSITISLPG+DP DAERRR+ AL+ALNERL +++ +S    M+
Sbjct:   18 SASVVVKALCAAVLFLYLLSFAVDT-GCLAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGVLVALKQTMGDC-VVLRVPQVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQRHSRG-RGDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVEDQSIWPSMD 308
The following BLAST results are available for this feature:
BLAST of TCONS_00023688-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1151.915e-6840.48Transmembrane protein 115 OS=Homo sapiens GN=TMEM1... [more]
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