TCONS_00022921-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022921-protein
Unique NameTCONS_00022921-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022921-protein ID=TCONS_00022921-protein|Name=TCONS_00022921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MAASSLMQPELDPLFSKALKLLQSREPDSAQLLNTLVQEHRDKLLGGGSK
KGSDVGGRQSPKVESVKSNNGRSNPSSTIENKRPVVNSLMDSLKEVSYEG
TKKIVKPVSVTTTEAEGSIEEMPLGSSHNLKRKKTGLDHSLDISSPDSDA
NDSIPLDDIINMDFGGPTCASCHLGKSNEEDNALVECMECSSSYHQKCHK
PNVTTKEINDPRHIFYCSKCTKKQKREAAQQQVSSIAKTIESTPPPAKPT
VSNPFQQSKPFRRPSVIPPSEQQKAATSSGAVTSESSMMFGVASTSLDET
TSTSSSSVSREGSPNTANAKYNRNREMAKHAMNRLEQVRKRAKLQQQALN
KRK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012883XLOC_012883Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022921TCONS_00022921Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 318..352
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..323
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..86
NoneNo IPR availableCDDcd15501PHD_Int12coord: 168..220
e-value: 6.95207E-19
score: 78.1557
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 168..221
e-value: 2.0E-7
score: 40.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 55..230
e-value: 2.8E-10
score: 39.7
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 169..222
e-value: 4.6E-8
score: 32.7
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 166..223
score: 9.018
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 169..220
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 166..226

Blast
[Close]
BLAST of TCONS_00022921-protein vs. Swiss-Prot (Human)
Match: INT12 (Integrator complex subunit 12 OS=Homo sapiens GN=INTS12 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.170e-20
Identity = 68/241 (28.22%), Postives = 109/241 (45.23%), Query Frame = 0 
Query:   10 ELDPLFSKALKLLQSREPDSAQLLNTLVQEHRDKLLGGGSKKGS------------DVGGRQSPKVESV---KSNNGRSNPSSTIEN---KRPVVNSLMDSLKEVSYEGTKKIVKPVSVTTTEAEGSIEEMPLGSSHNLKRKKTGLDHSLDISSPDSDANDSIPLDDIINMDFGGPTCASCHLGKSNEEDNALVECMECSSSYHQKCHKPNVTTKEINDPRHIFYCSKCTKKQKREAAQQQ 232
            ELDP+F KAL  L S+  DSA+ L  L+ E   + +    +               ++  +Q PK+ S     +NNG+   +  ++    KRP      D  + V      ++ KP + ++     S +++P+                 D+SS +  + D    D  + M      C    +   N+    LVEC EC + YH+ CHKP VT KE NDPR ++YC++CT++ KR A + Q
Sbjct:    8 ELDPIFLKALGFLHSKSKDSAEKLKALLDESLARGIDSSYRPSQKDVEPPKISSTKNISIKQEPKISSSLPSGNNNGKVLTTEKVKKEAEKRPADKMKSDITEGVDIPKKPRLEKPETQSSPITVQSSKDLPMA----------------DLSSFEETSAD----DFAMEMGLACVVCRQMMVASGNQ----LVECQECHNLYHRDCHKPQVTDKEANDPRLVWYCARCTRQMKRMAQKTQ 224
The following BLAST results are available for this feature:
BLAST of TCONS_00022921-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INT123.170e-2028.22Integrator complex subunit 12 OS=Homo sapiens GN=I... [more]
back to top