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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026960 ID=TCONS_00026960|Name=TCONS_00026960|organism=Clytia hemisphaerica|type=transcript|length=3287bpRun BLAST on NCBI transcript from alignment at sc0000597:21089..32166- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026960 ID=TCONS_00026960|Name=TCONS_00026960|organism=Clytia hemisphaerica|type=transcript|length=11078bp|location=Sequence derived from alignment at sc0000597:21089..32166- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026960 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 145.591 bits (366), Expect = 5.495e-35 Identity = 118/509 (23.18%), Postives = 214/509 (42.04%), Query Frame = 3
Query: 279 FDPPGEKEMESMRHESYKRQQFAATLRGIVYQICFAFVVFIIANDARRSSAYHLATGIRKMLKAHKNDIANYTAFEKVHSPRDVWPWLSNVILPEVFPEPWFSSPCKNGNSHQXXXXXXXXXXXXNEDPGIRDFPGRLYLNDLYSKVVTGMRLRHVRTENTSCVQFSLLNNNTNFKHCIGVFNLKNTEKGSYGTGWSKLTGEQKQHDHPTELPWIYKTSEELGSFPILATQHLYPGGGYAVQLFP-KSNWKSILGELKDHLWLDRYSRALILELDVYNAAEKQFISVRMVLEIEPFGGIIPFITVTPVTL----DNDSFWLICNKVAFFFLFMLFAYREYREILASGFSYLKSFWNIIE--ICLLAFICLAIYLEFTVEKYRSELTTRVNHRKPYTFIDFQVLAYTGLLFQITIGFVSFFVMIKVIRLLRFNRRISILTKTLKRALPDLAAMGLHLLIIYIASVIFSHMLLGVHLHQFSDFWKTAGTIISIMLNKFKVSEIIETKPILG 1784
+ PP +E M+ K Q+ A +R I+ + F +++ ++A R SAYHL R + + + F R+ + W + ++ ++ P PG ++ D SK+V ++R VR + +SC C ++L + YG GW+ T + W Y++ ++ +PI +Y GGGY V L + IL L D+ WLD +RA+ +E VYNA F V + LE G + + L D +++ ++ +F + + + + + + Y S WN++E I L ++ LA++++ V R R NHR+ I F A I F+ +K+ LLR N +++++T L+RA D++ + +L + +A I S+++ G L + + A T++S+ L F E+++ P+LG
Sbjct: 1923 YQPPLTAAIEKMKTTHLKEQKAFALIREILAYLGFLWMLLLVAYGQRDPSAYHLN---RHLQHSFTRGFSGVLGF------REFFKWANTTLVSNLYGHP----------------------------------PG--FITDGNSKLVGSAQIRQVRVQESSCPLAQ--QPQAYLNGCRAPYSLDAEDMADYGEGWNATTLSE----------WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCR-NHRE--EGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLG 2371 The following BLAST results are available for this feature:
BLAST of TCONS_00026960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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