TCONS_00021540-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021540-protein
Unique Name	TCONS_00021540-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	557

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021540-protein ID=TCONS_00021540-protein|Name=TCONS_00021540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
MGKMKKKGESGAATNYISRNQALKKLQLSLADFRRLCIMKGIYPREPKNR
KKVNKGSTAYKTYYYVKDIQYIAHEPVLKKFREFKIFMRKLKRAMGREEY
GDAKRIEENKPVYTLDHIVKERYPTFTDALRDLDDALSMVFLFSMLPQTN
QIKGEFIQRCKRLKVEFQHYIIASNSLKKVFISIKGIYYQAEIQGQKITW
VVPHQFAQHLPNDVDFRIMMTFIEFYTTMVGFINFQLYHNVNLAYPPQLN
INNNNNESSDTKYCQEVDLDDEKLAALSVSLKATLEDTTQELELDKFTND
DSNEEEAKQANDEEFETKFKQLFDGKKFYISREVPRDALVFIIRCFGGEV
SWDETVGIGSTYTEKDDGITHQLIDRPSINNQRLDRHYVQPQWVFDCVNS
RQLEPVNDYVPGSMLPPHLSPFVEEQEGDYIPPERKQMLEKEKELLRAEA
SGDEEEEQEEASEDETEEAEQEKETKPKKKAGNKRKHVEVNKKDDDDGKD
EMSAEEKKLALMMLPKKKKALYDKIMHSKKKKATHARKLEEKRTQHDKKV
SSKKSKN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012077	XLOC_012077	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021540	TCONS_00021540	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001357	BRCT_dom
IPR010613	PES

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0005730	nucleolus

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005730	nucleolus

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 436..475
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..511
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 525..557
IPR001357	BRCT domain	SMART	SM00292	BRCT_7	coord: 320..401 e-value: 2.0E-6 score: 37.4
IPR001357	BRCT domain	PFAM	PF16589	BRCT_2	coord: 320..410 e-value: 1.0E-10 score: 41.8
IPR001357	BRCT domain	GENE3D	3.40.50.10190		coord: 313..410 e-value: 5.8E-16 score: 58.1
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 318..411 score: 12.477
IPR001357	BRCT domain	CDD	cd00027	BRCT	coord: 325..398 e-value: 8.61891E-5 score: 39.6123
IPR001357	BRCT domain	SUPERFAMILY	52113	BRCT domain	coord: 320..413
IPR010613	Pescadillo	PFAM	PF06732	Pescadillo_N	coord: 6..270 e-value: 3.6E-126 score: 420.2
IPR010613	Pescadillo	HAMAP	MF_03028	Pescadillo	coord: 2..551 score: 17.682

Blast

[Close]

BLAST of TCONS_00021540-protein vs. Swiss-Prot (Human)
Match: PESC (Pescadillo homolog OS=Homo sapiens GN=PES1 PE=1 SV=1)

HSP 1 Score: 572.392 bits (1474), Expect = 0.000e+0
Identity = 294/591 (49.75%), Postives = 395/591 (66.84%), Query Frame = 0

Query:    1 MGKM-KKKGESGAATNYISRNQALKKLQLSLADFRRLCIMKGIYPREPKNRKKVNKGSTAYKTYYYVKDIQYIAHEPVLKKFREFKIFMRKLKRAMGREEYGDAKRIEENKPVYTLDHIVKERYPTFTDALRDLDDALSMVFLFSMLPQTNQIKGEFIQRCKRLKVEFQHYIIASNSLKKVFISIKGIYYQAEIQGQKITWVVPHQFAQHLPNDVDFRIMMTFIEFYTTMVGFINFQLYHNVNLAYPPQL-NINNNNNESSDTKYCQEVDLDDEKLAALSVSL-KATLEDTTQELELDKF-TNDDSNEEEAKQANDEEFETKFKQLFDGKKFYISREVPRDALVFIIRCFGGEVSWDETVGIGSTYTEKDDGITHQLIDRPSINNQRLDRHYVQPQWVFDCVNSRQLEPVNDYVPGSMLPPHLSPFVEEQEGDYIPPERKQMLEKEKELLRAEASGD---------------------------------EEEEQEEASEDETEEAEQEKETKPKKKAGNKRKHVEVNKKDDDDGKDEMSAEEKKLALMMLPKKKKALYDKIMHSKKKKATHARKLEEKRTQHDKKVSSKK 554
            MG + KKK E G+ATNYI+RN+A KKLQLSLADFRRLCI+KGIYP EPK++KKVNKGSTA +T+Y +KDI+++ HEP++ KFRE+K+F+RKL++A G+ E+   +R+++NKP Y LDHI+KERYPTF DALRDLDDALSM FLFS  P+T +   + IQ C+RL VEF HYIIA+ +L+KVF+SIKGIYYQAE+ GQ I W+ P+ F+   P DVD+R+M TF EFYTT++GF+NF+LY  +NL YPP+L        ++ +  Y  + +   EKLAALS SL +  +  T +E E+D+F T+ + + +E  +  + E + K K+LF+G KF+++REVPR+AL FIIR FGGEVSWD+++ IG+TY   D  ITHQ++DRP      + R YVQPQWVFD VN+R L PV +Y  G  LPPHLSPFV E+EGDY+PPE+ ++L     L R E  G+                                   E++EEA     EE   E + KP+  AG       +  +D      E  +E K+LA+MM+ K++K LY KIM  K++K   A KL EKR  HD+ V S+K
Sbjct:    1 MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTAARTFYLIKDIRFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIIKERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVQTIQLCRRLTVEFMHYIIAARALRKVFLSIKGIYYQAEVLGQPIVWITPYAFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQLLNLHYPPKLEGQAQAEAKAGEGTYALDSESCMEKLAALSASLARVVVPATEEEAEVDEFPTDGEMSAQEEDRRKELEAQEKHKKLFEGLKFFLNREVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQTSVIGRCYVQPQWVFDSVNARLLLPVAEYFSGVQLPPHLSPFVTEKEGDYVPPEKLKLL----ALQRGEDPGNLNESEEEEEEDDNNEGDGDEEGENEEEEEDAEAGSEKEEEARLAALEEQRMEGK-KPRVMAGT------LKLEDKQRLAQEEESEAKRLAIMMMKKREKYLYQKIMFGKRRKIREANKLAEKRKAHDEAVRSEK 580

The following BLAST results are available for this feature:

BLAST of TCONS_00021540-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021540-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PESC	0.000e+0	49.75	Pescadillo homolog OS=Homo sapiens GN=PES1 PE=1 SV...	[more]

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TCONS_00021540-protein (polypeptide) - C. hemisphaerica