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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021540 ID=TCONS_00021540|Name=TCONS_00021540|organism=Clytia hemisphaerica|type=transcript|length=2038bpRun BLAST on NCBI protein sequence of TCONS_00021540-protein >TCONS_00021540-protein ID=TCONS_00021540-protein|Name=TCONS_00021540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp MGKMKKKGESGAATNYISRNQALKKLQLSLADFRRLCIMKGIYPREPKNRRun BLAST on NCBI transcript from alignment at sc0000389:234095..253096+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021540 ID=TCONS_00021540|Name=TCONS_00021540|organism=Clytia hemisphaerica|type=transcript|length=19002bp|location=Sequence derived from alignment at sc0000389:234095..253096+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000389:234095..253096+ >TCONS_00021540 ID=TCONS_00021540|Name=TCONS_00021540|organism=Clytia hemisphaerica|type=CDS|length=26784bp|location=Sequence derived from alignment at sc0000389:234095..253096+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021540 vs. Swiss-Prot (Human)
Match: PESC (Pescadillo homolog OS=Homo sapiens GN=PES1 PE=1 SV=1) HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0 Identity = 250/442 (56.56%), Postives = 334/442 (75.57%), Query Frame = 3
Query: 69 MGKM-KKKGESGAATNYISRNQALKKLQLSLADFRRLCIMKGIYPREPKNRKKVNKGSTAYKTYYYVKDIQYIAHEPVLKKFREFKIFMRKLKRAMGREEYGDAKRIEENKPVYTLDHIVKERYPTFTDALRDLDDALSMVFLFSMLPQTNQIKGEFIQRCKRLKVEFQHYIIASNSLKKVFISIKGIYYQAEIQGQKITWVVPHQFAQHLPNDVDFRIMMTFIEFYTTMVGFINFQLYHNVNLAYPPQLX-XXXXXXESSDTKYCQEVDLDDEKLAALSVSL-KATLEDTTQELELDKF-TNDDSNEEEAKQANDEEFETKFKQLFDGKKFYISREVPRDALVFIIRCFGGEVSWDETVGIGSTYTEKDDGITHQLIDRPSINNQRLDRHYVQPQWVFDCVNSRQLEPVNDYVPGSMLPPHLSPFVEEQEGDYIPPERKQM 1382
MG + KKK E G+ATNYI+RN+A KKLQLSLADFRRLCI+KGIYP EPK++KKVNKGSTA +T+Y +KDI+++ HEP++ KFRE+K+F+RKL++A G+ E+ +R+++NKP Y LDHI+KERYPTF DALRDLDDALSM FLFS P+T + + IQ C+RL VEF HYIIA+ +L+KVF+SIKGIYYQAE+ GQ I W+ P+ F+ P DVD+R+M TF EFYTT++GF+NF+LY +NL YPP+L ++ + Y + + EKLAALS SL + + T +E E+D+F T+ + + +E + + E + K K+LF+G KF+++REVPR+AL FIIR FGGEVSWD+++ IG+TY D ITHQ++DRP + R YVQPQWVFD VN+R L PV +Y G LPPHLSPFV E+EGDY+PPE+ ++
Sbjct: 1 MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTAARTFYLIKDIRFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIIKERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVQTIQLCRRLTVEFMHYIIAARALRKVFLSIKGIYYQAEVLGQPIVWITPYAFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQLLNLHYPPKLEGQAQAEAKAGEGTYALDSESCMEKLAALSASLARVVVPATEEEAEVDEFPTDGEMSAQEEDRRKELEAQEKHKKLFEGLKFFLNREVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQTSVIGRCYVQPQWVFDSVNARLLLPVAEYFSGVQLPPHLSPFVTEKEGDYVPPEKLKL 442 The following BLAST results are available for this feature:
BLAST of TCONS_00021540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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