TCONS_00020385-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020385-protein
Unique NameTCONS_00020385-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020385-protein ID=TCONS_00020385-protein|Name=TCONS_00020385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=874bp
MALPLAKLEVKQSMIRPESNNELKKTISSVSCGNSDSGIEDNADDQISPI
ATNSSQQKQNQNGIRRRGSIWNIFSRKSKKDHRFGENNRPENLNISNESR
YQKSQNVDLSLPPSSHHQKLRPKLSICSTSTNSSIAGHGQISSRLSHGSA
TIGSYTSDLGDSVPSTPVSTISSAGFTEIPGTIGLHNLGNTCYFNAVIQC
LAHIDVISEYFVMEHFMADLTTRNHHNHSLKMRHRQHSDSNNNDLGQLTY
MIGLLIKSICFGENYTRQLLEEVLEVVRFHNRSYNINEQQDAQEIFMWLI
NQIHSESCSNTAPKRRSIKSKDIKKKKQSNEEEQAVASFASFTKYKQSYI
QGLFLSQYQSSIPCLRCGKSSSTFDPYINLSLEIPSKPKSVLYTTVVSRK
QIPGTVPVTNKTIGNVAVTIKPPRMVRYGFEFQRKGTLHELRTEIVDQSG
IQDFVIVEITTHGVKRILQNDNPLSILPNDEKSLYAVELSKDVHKADEAE
TRSNEIVLVVSNVERRNRTNISFGEPSVLCVSDQMSFKRLQTLIRKQMET
NLQEHLTKVIKENPICLGLRIVNNNNDDSQSVNTKPIFLKNDVGYPLLQP
NILESMTYDDNIQKTCLYLVAEWESSANHWFMSKFRYPISVTDDKSCSRM
RERANEQFVVDIHDCLKLQTKEEKLMEVGAWKCQFCQQEQSGITKKMSLW
SLPDVLVLHLKRFDQIQTFKDKARTLVRFPIHGLDLSSYVATTTSSTKDH
TELLDSRFQKESIRLRYQAPPQNESQCLYDLKAVCNHIGSDLNQGHYTAS
CYNSFNRNWYNFDDRTVNSLSENEVVNSDAYILFYQRRELSDRVPEKVSM
SLRNKERSKRIQDHWATEDIDKVE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011447XLOC_011447Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020385TCONS_00020385Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR018200USP_CS
IPR028889USP_dom
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016579 protein deubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 183..835
e-value: 3.8E-51
score: 174.0
NoneNo IPR availableGENE3D3.90.70.10coord: 176..841
e-value: 2.0E-79
score: 266.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 310..329
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..122
NoneNo IPR availableSUPERFAMILY54001Cysteine proteinasescoord: 660..749
coord: 778..837
coord: 179..389
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00972USP_1coord: 184..199
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00973USP_2coord: 779..797
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 183..838
score: 44.009

Blast
[Close]
BLAST of TCONS_00020385-protein vs. Swiss-Prot (Human)
Match: UBP43 (Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43 PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.685e-70
Identity = 193/717 (26.92%), Postives = 321/717 (44.77%), Query Frame = 0 
Query:  180 PGTIGLHNLGNTCYFNAVIQCLAHIDVISEYFVMEHFMADLTTRNHHNHSLKMRHRQHSDSNNNDLGQLTYMIGLLIKSICFGENYTRQLLEEVLEVVRFHNRSYNINEQQDAQEIFMWLINQIHSESCSNTAPKRRSIKSKDIKKKKQSNEEEQAVASFASFTKYKQSYIQGLFLSQYQSSIPCLRCGKSSSTFDPYINLSLEIPSKPKSVLYTTVV--SRKQIPGTVPVTNKTIGNVAVTIKPPRMVRYGFEFQRKGTLHELRTEIVDQSGIQ--DFVIVEITTHGVKR----------ILQNDN--PLSILPNDEK---SLYAVELSKDVHKADEAETR-------SNEIVLVVSNVERRNRTNISFGEPSVLCVSDQMSFKRLQTLIRKQMETNLQEHLTKVIKENPI-----CLGLRIVNNNNDDSQSVNTKPIFLKNDVGYPLLQPNILESMTYDDNIQKTCLYLVAEWESSANHWFMSKFRYPISVTDDKSCSRMRERANEQFVVDIHDCLKLQTKEEKLMEVGAWKCQFCQQEQSGITKKMSLWSLPDVLVLHLKRFDQIQTFKDKARTLVRFPIHGLDLSSYVATTTSSTKDHTELLDSRFQKESIRLRYQAPPQNESQCLYDLKAVCNHIGSDLNQGHYTASCYNSFNRNWYNFDDRTVNSLSENEVVNSDAYILFYQRRELSDRVPEKVSMSLRNKERSKRIQDHW 865
            PG  GL N GNTC+ NAV+QCL++ D+++E+  +  + A                            ++T  +  L++++ +   YT QL  E    V  +   +  N Q DA E  +WL++++H +   ++   R  +  K   +  +++E      S ++     QS++Q  F +QY+SS+ C  C K S+TFDP++ +SL IP +    L  T+V  S+ Q                      R +R G       T+  LR  + ++ G+   + ++VE+   G +R          I + DN     + P+  +   S + + LS     A     R        ++++++  N+    +    FG P ++     +S+ +LQ  I  ++      HL K   E P+        +R+V         ++    +L      PL    +   +          + L  EW+SS         +   +   D    + +        +D  +C +  TKEE+L +  AWKC  CQ  Q G+ K +SLW+LPD+L++HLKRF Q+   ++K  TLV+FP+ GL+++ +VA  ++S +       S  Q + +   Y          LYDL AVCNH G +L  GHYTA C NS +  WY++DD TV  L E+EV    AYILFYQ+R   + +P   + S      S  + DHW
Sbjct:   98 PGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRA-----------------------APGRAEVTEQLAALVRAL-WTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSS---RGPVSEKLPPEATKTSEN---CLSPSAQLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQ----------------------RFLRVGLAVPILSTVAALRKMVAEEGGVPADEVILVELYPSGFQRSFFDEEDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASPRLAAREGQRFSLSLHSESKVLILFCNLVGSGQQASRFGPPFLIREDRAVSWAQLQQSILSKVR-----HLMK--SEAPVQNLGSLFSIRVVG--------LSVACSYLSPKDSRPLCHWAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQAHQQHSCTLD--ECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVK-LSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPL------DFLYDLYAVCNHHG-NLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKR---NSIPPWSASSSMRGSTSSSLSDHW 734
The following BLAST results are available for this feature:
BLAST of TCONS_00020385-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP431.685e-7026.92Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo s... [more]
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