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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020385 ID=TCONS_00020385|Name=TCONS_00020385|organism=Clytia hemisphaerica|type=transcript|length=3642bpRun BLAST on NCBI protein sequence of TCONS_00020385-protein >TCONS_00020385-protein ID=TCONS_00020385-protein|Name=TCONS_00020385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=874bp MALPLAKLEVKQSMIRPESNNELKKTISSVSCGNSDSGIEDNADDQISPIRun BLAST on NCBI transcript from alignment at sc0000355:259310..269400- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020385 ID=TCONS_00020385|Name=TCONS_00020385|organism=Clytia hemisphaerica|type=transcript|length=10091bp|location=Sequence derived from alignment at sc0000355:259310..269400- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000355:259310..269400- >TCONS_00020385 ID=TCONS_00020385|Name=TCONS_00020385|organism=Clytia hemisphaerica|type=CDS|length=23625bp|location=Sequence derived from alignment at sc0000355:259310..269400- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020385 vs. Swiss-Prot (Human)
Match: UBP43 (Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43 PE=1 SV=2) HSP 1 Score: 246.514 bits (628), Expect = 8.285e-67 Identity = 193/718 (26.88%), Postives = 319/718 (44.43%), Query Frame = 2
Query: 608 PGTIGLHNLGNTCYFNAVIQCLAHIDVISEYFVMEHFMADLTTRNHHNHSLKMRHRQHSDSNNNDLGQLTYMIGLLIKSICFGENYTRQLLEEVLEVVRFHNRSYNINEQQDAQEIFMWLINQIHSE-SCSNTAPXXXXXXXXXXXXXXQSNEEEQAVASFASFTKYKQSYIQGLFLSQYQSSIPCLRCGKSSSTFDPYINLSLEIPSKPKSVLYTTVV--SRKQIPGTVPVTNKTIGNVAVTIKPPRMVRYGFEFQRKGTLHELRTEIVDQSGIQ--DFVIVEITTHGVKR----------ILQNDN--PLSILPNDEK---SLYAVELSKDVHKADEAETR-------SNEIVLVVSNVERRNRTNISFGEPSVLCVSDQMSFKRLQTLIRKQMETNLQEHLTKVIKENPI-----CLGLRIXXXXXXXXXXXXTKPIFLKNDVGYPLLQPNILESMTYDDNIQKTCLYLVAEWESSANHWFMSKFRYPISVTDDKSCSRMRERANEQFVVDIHDCLKLQTKEEKLMEVGAWKCQFCQQEQSGITKKMSLWSLPDVLVLHLKRFDQIQTFKDKARTLVRFPIHGLDLSSYVATTTSSTKDHTELLDSRFQKESIRLRYQAPPQNESQCLYDLKAVCNHIGSDLNQGHYTASCYNSFNRNWYNFDDRTVNSLSENEVVNSDAYILFYQRRELSDRVPEKVSMSLRNKERSKRIQDHW 2665
PG GL N GNTC+ NAV+QCL++ D+++E+ + + A ++T + L++++ + YT QL E V + + N Q DA E +WL++++H + S+ P + ++ + + S ++ QS++Q F +QY+SS+ C C K S+TFDP++ +SL IP + L T+V S+ Q R +R G T+ LR + ++ G+ + ++VE+ G +R I + DN + P+ + S + + LS A R ++++++ N+ + FG P ++ +S+ +LQ I ++ HL K E P+ +R+V + S +L PL + + + L EW+SS + + D + + +D +C + TKEE+L + AWKC CQ Q G+ K +SLW+LPD+L++HLKRF Q+ ++K TLV+FP+ GL+++ +VA ++S + S Q + + Y LYDL AVCNH G +L GHYTA C NS + WY++DD TV L E+EV AYILFYQ+R + +P + S S + DHW
Sbjct: 98 PGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRA-----------------------APGRAEVTEQLAALVRAL-WTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPP-------EATKTSENCLSPSAQLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQ----------------------RFLRVGLAVPILSTVAALRKMVAEEGGVPADEVILVELYPSGFQRSFFDEEDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASPRLAAREGQRFSLSLHSESKVLILFCNLVGSGQQASRFGPPFLIREDRAVSWAQLQQSILSKVR-----HLMK--SEAPVQNLGSLFSIRVVGLSVACS--------YLSPKDSRPLCHWAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQAHQQHSCTLD--ECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVK-LSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPL------DFLYDLYAVCNHHG-NLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKR---NSIPPWSASSSMRGSTSSSLSDHW 734 The following BLAST results are available for this feature:
BLAST of TCONS_00020385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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