TCONS_00026841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026841
Unique NameTCONS_00026841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026841 ID=TCONS_00026841|Name=TCONS_00026841|organism=Clytia hemisphaerica|type=transcript|length=543bp
GGACGATTTTGAAGTGGAAgatATTGGTCTAACATTGCACCAAATTAAAG
ATGTACAAACCAAAATTATGGCTTGGTTAACCACCCACCCTTCAGTGACG
AAGAAATTTTTCGCAGAGGAGGTACTTCAAAGAGGGGCTGGTACCTTCTC
TGACTATATGAAAACAACCATCGTGCCAACCTCAGAAGCCGGGAAAAAGC
ACTGGACAACAATGGCTGCGTTTTTGGATGATAAGTCGACACAAGATGCG
CTATTAAACAAGAAAGCCTCGTGCGATCGTGaGAAATCGGGACACAGTGG
TTTGAAAACACAGTCGTCGCCGAGGGTTTCTTCGTTCTCCAGCCAACAGA
AGGCAATCCTGAATGGCTATTATAAAGAACACTGTTTCATCGATAAAGAT
GAAACCAAAGAGTTAGCTCAAAGAACAAAACTCACCTCAAAACAGATTAA
TACATGGTTCAACAACCGACGATCCAAGGACCCTGAAGCCAAGAAACGTA
AACTTGCTAAttgagaaaataaatatatgtGTCATCATACAAA
Run BLAST on NCBI

protein sequence of TCONS_00026841-protein

>TCONS_00026841-protein ID=TCONS_00026841-protein|Name=TCONS_00026841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
DDFEVEDIGLTLHQIKDVQTKIMAWLTTHPSVTKKFFAEEVLQRGAGTFS
DYMKTTIVPTSEAGKKHWTTMAAFLDDKSTQDALLNKKASCDREKSGHSG
LKTQSSPRVSSFSSQQKAILNGYYKEHCFIDKDETKELAQRTKLTSKQIN
TWFNNRRSKDPEAKKRKLAN
Run BLAST on NCBI

transcript from alignment at sc0000591:173185..174840+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026841 ID=TCONS_00026841|Name=TCONS_00026841|organism=Clytia hemisphaerica|type=transcript|length=1656bp|location=Sequence derived from alignment at sc0000591:173185..174840+ (Clytia hemisphaerica)
GGACGATTTTGAAGTGGAAgatgtaagtatttttttagTTTGTCAACAAC
tgaaacattttattttgtagTCATTGTCTCAGTAGCCCGgggcccggggt
ccacttaaaaagcttttttaaagactggatggcgcgattaagtggcccgg
tagtatatggtaatatgatTTTccctaggcggactgtaaaacagtcttTT
TCCGACAATTCAAAACGAGACGGGAAATTGCgtaatttaaaatcaaaaaa
aaagggTAGGGGTAAAACATTTCGAAAATGATGTGcgtgattttttttat
tctttttcctGATTTCACTATTTTggtttctttgattttattcgattgat
tttgaatttgatttgttttgattttatatgaTCTTTCATTGTTTATGTAA
TACGGATGGTTGACTTAACTTCTACGAGGTGCCAAATTTCGACAACTTCT
TCTAAACTTCTTTCGTTTTTCATAGATTGGTCTAACATTGCACCAAATTA
AAGATGTACAAACCAAAATTATGGCTTGGTTAACCACCCACCCTTCAGTG
ACGAAGAAATTTTTCGCAGAGGAGGTACTTCAAAGAGGGGCTGGTACCTT
CTCTGACTATATGAAAACAACCATCGTGCCAACCTCAGAAGCCGGGAAAA
AGCACTGGACAACAATGGCTGCGTTTTTGGATGATAAGTCGACACAAGAT
GCGCTATTAAACAAGAAAGCCTCGTGCGATCGTGGTAAGTCTTTTAtgta
ttttaaaattcattCCAAAATTGAATTTTCCAAATATGGGTGGGTTTAAG
ATAatgcttttctatttttatagGGTTTAAAATGTTTGGGAGGATCATTT
TTTCTCATTCTGAAGGCCTTGTTGTTTTCACTTCTGTAAACaggagtttt
cgaaaatccctttaaattttcaaacttttttagaGAAATCGGGACACAGT
GGTTTGAAAACACAGTCGTCGCCGAGGGTTTCTTCGTTCTCCAGCCAACA
GAAGGCAATCCTGAATGGCTATTATAAAGAACACTGTTTCATCGATAAAG
ATGAAACCAAAGAGTTAGCTCAAAGAACAAAACTCACCTCAAAACAGGTA
CGATACCAATTAAACACAGTAGTACCATCATAGTCACAGAGTAGTCGTTG
GATACTCTTTCTTAGCTagtatgtcataaacgtctgtcTTCTGTCTTCTC
GTGGGGAACATATTTTGGGAAGCTCAATATTGAATCATTGGAACCTATCA
TGCTAAATTGTAAGCGTGGGGATACCAGACAATTTCGTTTTTCGTATTAC
TAGACTTATTTTTAGCATCGggtaaatatttctaaacataGAATTACGAA
GAATCTCATGATTTTTATCATACTCTATGCCCCAAAAACTTGCCTTCTTT
TTTCGTGATTCCTTAGACACTTCTGATAGAAAGGTGTGATATGTAAAGAA
GGAAAGAAATAAAAGTTTCCATACTTCCGTGTATTGGAAGATTTTACTTT
CATGACTCTTTTCCAAGAAGAGAGCTCTGCATTCAAAAGTTAATTTTCCT
TATTTTAGATTAATACATGGTTCAACAACCGACGATCCAAGGACCCTGAA
GCCAAGAAACGTAAACTTGCTAAttgagaaaataaatatatgtGTCATCA
TACAAA

Coding sequence (CDS) from alignment at sc0000591:173185..174840+

>TCONS_00026841 ID=TCONS_00026841|Name=TCONS_00026841|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0000591:173185..174840+ (Clytia hemisphaerica)
GACGATTTTGAAGTGGAAgatATTGGTCTAACATTGCACCAAATTAAAGA
TGTACAAACCAAAATTATGGCTTGGTTAACCACCCACCCTTCAGTGACGA
AGAAATTTTTCGCAGAGGAGGTACTTCAAAGAGGGGCTGGTACCTTCTCT
GACTATATGAAAACAACCATCGTGCCAACCTCAGAAGCCGGGAAAAAGCA
CTGGACAACAATGGCTGCGTTTTTGGATGATAAGTCGACACAAGATGCGC
TATTAAACAAGAAAGCCTCGTGCGATCGTGaGAAATCGGGACACAGTGGT
TTGAAAACACAGTCGTCGCCGAGGGTTTCTTCGTTCTCCAGCCAACAGAA
GGCAATCCTGAATGGCTATTATAAAGAACACTGTTTCATCGATAAAGATG
AAACCAAAGAGTTAGCTCAAAGAACAAAACTCACCTCAAAACAGATTAAT
ACATGGTTCAACAACCGACGATCCAAGGACCCTGAAGCCAAGAAACGTAA
ACTTGCTAAttgaGACGATTTTGAAGTGGAAgatATTGGTCTAACATTGC
ACCAAATTAAAGATGTACAAACCAAAATTATGGCTTGGTTAACCACCCAC
CCTTCAGTGACGAAGAAATTTTTCGCAGAGGAGGTACTTCAAAGAGGGGC
TGGTACCTTCTCTGACTATATGAAAACAACCATCGTGCCAACCTCAGAAG
CCGGGAAAAAGCACTGGACAACAATGGCTGCGTTTTTGGATGATAAGTCG
ACACAAGATGCGCTATTAAACAAGAAAGCCTCGTGCGATCGTGaGAAATC
GGGACACAGTGGTTTGAAAACACAGTCGTCGCCGAGGGTTTCTTCGTTCT
CCAGCCAACAGAAGGCAATCCTGAATGGCTATTATAAAGAACACTGTTTC
ATCGATAAAGATGAAACCAAAGAGTTAGCTCAAAGAACAAAACTCACCTC
AAAACAGATTAATACATGGTTCAACAACCGACGATCCAAGGACCCTGAAG
CCAAGAAACGTAAACTTGCTAAttgaGACGATTTTGAAGTGGAAgatATT
GGTCTAACATTGCACCAAATTAAAGATGTACAAACCAAAATTATGGCTTG
GTTAACCACCCACCCTTCAGTGACGAAGAAATTTTTCGCAGAGGAGGTAC
TTCAAAGAGGGGCTGGTACCTTCTCTGACTATATGAAAACAACCATCGTG
CCAACCTCAGAAGCCGGGAAAAAGCACTGGACAACAATGGCTGCGTTTTT
GGATGATAAGTCGACACAAGATGCGCTATTAAACAAGAAAGCCTCGTGCG
ATCGTGaGAAATCGGGACACAGTGGTTTGAAAACACAGTCGTCGCCGAGG
GTTTCTTCGTTCTCCAGCCAACAGAAGGCAATCCTGAATGGCTATTATAA
AGAACACTGTTTCATCGATAAAGATGAAACCAAAGAGTTAGCTCAAAGAA
CAAAACTCACCTCAAAACAGATTAATACATGGTTCAACAACCGACGATCC
AAGGACCCTGAAGCCAAGAAACGTAAACTTGCTAAttgaGACGATTTTGA
AGTGGAAgatATTGGTCTAACATTGCACCAAATTAAAGATGTACAAACCA
AAATTATGGCTTGGTTAACCACCCACCCTTCAGTGACGAAGAAATTTTTC
GCAGAGGAGGTACTTCAAAGAGGGGCTGGTACCTTCTCTGACTATATGAA
AACAACCATCGTGCCAACCTCAGAAGCCGGGAAAAAGCACTGGACAACAA
TGGCTGCGTTTTTGGATGATAAGTCGACACAAGATGCGCTATTAAACAAG
AAAGCCTCGTGCGATCGTGaGAAATCGGGACACAGTGGTTTGAAAACACA
GTCGTCGCCGAGGGTTTCTTCGTTCTCCAGCCAACAGAAGGCAATCCTGA
ATGGCTATTATAAAGAACACTGTTTCATCGATAAAGATGAAACCAAAGAG
TTAGCTCAAAGAACAAAACTCACCTCAAAACAGATTAATACATGGTTCAA
CAACCGACGATCCAAGGACCCTGAAGCCAAGAAACGTAAACTTGCTAAtt
ga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015070XLOC_015070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026841-exon-sc0000591-1491911889:173185..173206TCONS_00026841-exon-sc0000591-1491911889:173185..173206Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1510915933:173185..173206TCONS_00026841-exon-sc0000591-1510915933:173185..173206Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1575043694:173185..173206TCONS_00026841-exon-sc0000591-1575043694:173185..173206Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1491911889:173660..173918TCONS_00026841-exon-sc0000591-1491911889:173660..173918Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1510915933:173660..173918TCONS_00026841-exon-sc0000591-1510915933:173660..173918Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1575043694:173660..173918TCONS_00026841-exon-sc0000591-1575043694:173660..173918Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1491911889:174118..174281TCONS_00026841-exon-sc0000591-1491911889:174118..174281Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1510915933:174118..174281TCONS_00026841-exon-sc0000591-1510915933:174118..174281Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1575043694:174118..174281TCONS_00026841-exon-sc0000591-1575043694:174118..174281Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1491911889:174743..174840TCONS_00026841-exon-sc0000591-1491911889:174743..174840Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1510915933:174743..174840TCONS_00026841-exon-sc0000591-1510915933:174743..174840Clytia hemisphaericaexon
TCONS_00026841-exon-sc0000591-1575043694:174743..174840TCONS_00026841-exon-sc0000591-1575043694:174743..174840Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026841-proteinTCONS_00026841-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000591supercontigsc0000591:173185..174840 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.106221	0	0.120269	0.117664	0	0.565969	0.212603	0	1.16363	0.665237	0.430464	0.707425	1.7661	1.68739	1.34612	1.50077	0	1.54752	0.782193	0.936666	1.6432	0.590194	0	0	0.456178	0.814256	0.873899	0.610461	0	1.92189
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009057Homeobox-like
IPR010982Lambda_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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