TCONS_00026845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026845
Unique NameTCONS_00026845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026845 ID=TCONS_00026845|Name=TCONS_00026845|organism=Clytia hemisphaerica|type=transcript|length=313bp
CTTTCATCATCTTCTTGAGTATCTGGTGTTACATGTTTATAGTATCGAAA
AGGTCCATGGCTTTGCATCGTTTGAGCTTGGTATTACGAGCTTGGTATTA
CCATCGCCTTcctgtttttgttgttgtttgctACAATGTACTCAATCATT
TCACTCATCATGGATAGGTACTTATAAACCATTGGTTCGTTTCTTCACAC
CTGAACACTGAAAGAGTTCATAAAAGTGATACATATGCTATGCAGGGATC
AATCAATAACCAAATATCACGATTCTTTATCAACGACGGAAATATTGCTT
CCCattcaataat
Run BLAST on NCBI

transcript from alignment at sc0000591:158890..159761-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026845 ID=TCONS_00026845|Name=TCONS_00026845|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at sc0000591:158890..159761- (Clytia hemisphaerica)
CTTTCATCATCTTCTTGAGGTGAGAGTAGTTGATTTATTTCAAAGTTTAT
TATTGACTCCTTGTCAAAGTTATTTTCAAAAAAGATAGCATATTCATAGT
TTATATTTTCTTTTTTGCATTTATAAATCTCGAATTTGGTGTTGAAATGA
AAATGTTGGTAATTCGTTGATTGTTTATTGTTGTTTTAGTATCTGGTGTT
ACATGTTTATAGTATCGAAAAGGTCCATGGCTTTGCATCGTTTGAGCTTG
GTATTACGAGCTTGGTATTACCATCGCCTTCCTGTTTTTGTTGTTGTTTG
CTACAATGTACTCAATCATTTCACTCATCATGGATAGGTACTTATAAACC
ATTGGTTCGTTTCTTCACACCTGAACACTGAAAGAGTTCATAAAAGTGAT
ACGTAAGCTAAAGGTCTCTTTTTGATCCATCAAAATTTGCTAACGCAGAC
ACTTTAACGTGTGTTTCTAGGTATATCTTAGAAAGCAATCATTTTATATA
TAGTCCTTCCATTTTCATTTGAATATGTCTTTTTACGAGGTTCAATTATT
CGTCCAGCCACATCTCTCAAAGAAAGTTAAAAATCTATGATAGTCTTTTG
TCTCAATGAAAGAATCAAAGGGATTTGTTAGCTAGTTAGCAAGCGCTCTG
TTTCATTACTTTAACATACAAAATATTTGATAAGGACTATACCGTAAGCA
ATTAATCATGAATGATCTAAGTTTTAAAGAGTGAAGTGATTTATTATTTA
CCTGTGTATGGGACTTTAATATCTTCATTGTTTTGTTGCAGATATGCTAT
GCAGGGATCAATCAATAACCAAATATCACGATTCTTTATCAACGACGGAA
ATATTGCTTCCCATTCAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015073XLOC_015073Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026845-exon-sc0000591-1575043694:159743..159761TCONS_00026845-exon-sc0000591-1575043694:159743..159761Clytia hemisphaericaexon
TCONS_00026845-exon-sc0000591-1575043694:159360..159572TCONS_00026845-exon-sc0000591-1575043694:159360..159572Clytia hemisphaericaexon
TCONS_00026845-exon-sc0000591-1575043694:158890..158970TCONS_00026845-exon-sc0000591-1575043694:158890..158970Clytia hemisphaericaexon
TCONS_00026845-exon-sc0000591-1510915933:159743..159761TCONS_00026845-exon-sc0000591-1510915933:159743..159761Clytia hemisphaericaexon
TCONS_00026845-exon-sc0000591-1510915933:159360..159572TCONS_00026845-exon-sc0000591-1510915933:159360..159572Clytia hemisphaericaexon
TCONS_00026845-exon-sc0000591-1510915933:158890..158970TCONS_00026845-exon-sc0000591-1510915933:158890..158970Clytia hemisphaericaexon
TCONS_00026845-exon-sc0000591-1491911889:159743..159761TCONS_00026845-exon-sc0000591-1491911889:159743..159761Clytia hemisphaericaexon
TCONS_00026845-exon-sc0000591-1491911889:159360..159572TCONS_00026845-exon-sc0000591-1491911889:159360..159572Clytia hemisphaericaexon
TCONS_00026845-exon-sc0000591-1491911889:158890..158970TCONS_00026845-exon-sc0000591-1491911889:158890..158970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000591supercontigsc0000591:158890..159761 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.681472	0.757681	1.93066	0	0	0	0	0	0	1.65382	2.91355	2.39431	0	0.444325	1.27331	0.477288	0.345954	0.863975	0.488936	1.69024	9.28521	7.78291	4.72125	6.30784	0	0.326779	11.6646	6.53801	8.83788	7.25646
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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