TCONS_00019267-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019267-protein
Unique NameTCONS_00019267-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019267-protein ID=TCONS_00019267-protein|Name=TCONS_00019267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MSTGTTVAAPDAPTNKKIYVGNLGTNVTRDDLVNLFGLAATPYLKTSCTI
EIATCEKTGKSKNFAFVNVPEHVHSELMKLNGIEFYGRQLVIEEAKTKDD
EKNDENKENRNKQRPYNNNRRGRGGYNRNNGRGGNRYDQRKKYTVPAIEA
DQVFSLVDGGCNLTNPRFNQFIDYVIARALKGGIQKMVVTGLKMNGCKSA
VVMSKTRPNILYAAVGIHPHFVKDDWTDKSLNQIEELVKDPCVVAIGECG
LDFNKDYSPRELQETAFKEQINLAVRYKKTLLVHDRDAHQSILDILEPFT
DALPPVIIHCFTGTKDQIKAYIDRGYYIGVTGYLCKEKYGGSLREAIKDG
TLPLDKIIVQTNSPYMTPSVPQAEIDPISQTLLNSCCADNEPCTLSVIVR
YIARLISQEPSQVADVTTATAMKLFRFTKSEN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010818XLOC_010818Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019267TCONS_00019267Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR001130TatD_family
IPR032466Metal_Hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0016788hydrolase activity, acting on ester bonds
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..112
NoneNo IPR availableGENE3D3.20.20.140coord: 154..432
e-value: 1.9E-68
score: 230.2
NoneNo IPR availableGENE3D3.30.70.330coord: 10..124
e-value: 2.0E-15
score: 56.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..138
NoneNo IPR availableCDDcd01310TatD_DNAsecoord: 156..426
e-value: 4.589E-82
score: 254.42
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..93
e-value: 5.3E-7
score: 39.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..90
e-value: 1.6E-6
score: 27.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 16..97
score: 12.509
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 9..126
IPR001130TatD familyPFAMPF01026TatD_DNasecoord: 157..425
e-value: 1.2E-59
score: 201.7
IPR032466Metal-dependent hydrolaseSUPERFAMILY51556Metallo-dependent hydrolasescoord: 156..426

Blast
[Close]
BLAST of TCONS_00019267-protein vs. Swiss-Prot (Human)
Match: TATD1 (Putative deoxyribonuclease TATDN1 OS=Homo sapiens GN=TATDN1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.714e-30
Identity = 86/297 (28.96%), Postives = 151/297 (50.84%), Query Frame = 0 
Query:  154 FSLVDGGCNLTNPRFNQF----------IDYVIARALKGGIQKMVVTGLKMNGCKSAVVMSKTRPNILYAAVGIHP----HFVKDDWTDKSLNQIEELVKD--PCVVAIGECGLDFNK-DYSPRELQETAFKEQINLAVRYKKTLLVHDRDAHQSILDILEPFTDALPPVIIHCFTGTKDQIKAYIDRGYYIGVTGYLCKEKYGGSLREAIKDGTLPLDKIIVQTNSPYMTPSVPQAEIDPISQTL-------LNSCCAD-NEPCTLSVIVRYIARLISQEPSQVADVTTATAMKLF 425
            F  +D G NLT+P F             +  VI RA++ G++K ++TG  +   K A+ +++T   + ++ VG HP     F K++  D  L ++  L ++    VVAIGECGLDF++  + P++ Q   F++Q  L+ + K  + +H R++H   LDI++   D     ++H F GTK+   A ID   YIG  G  C  K   +L E +K  ++P +K++++T++P+       A    I              C  D NEPC +  I+  ++ +  ++P ++A+      +K+F
Sbjct:    4 FKFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQTN-GMFFSTVGCHPTRCGEFEKNN-PDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDIMKRNRDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNG--CSLKTEANL-EVLK--SIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVF 293
The following BLAST results are available for this feature:
BLAST of TCONS_00019267-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TATD12.714e-3028.96Putative deoxyribonuclease TATDN1 OS=Homo sapiens ... [more]
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