TCONS_00019056-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019056-protein
Unique NameTCONS_00019056-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019056-protein ID=TCONS_00019056-protein|Name=TCONS_00019056-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
ELFTGVTNLVEHPIAKDAPSQPKSMPNMPVFLTKKERKKIRTQRRREEEK
EKNVKIRLGLEPPPPPKVKISNLMRVLASEAVQDPTKVEAHVRAQMAARQ
KKHEQANEERKLTKEQRTEKKIKKLKEDTSLGVHIAVYSLLDLSNPSKKF
KVDTNATQLYLTGSVLITKELVLVIAEGGPKSQKKFKRLMMHRIKWDEDT
AQGRRQDKIDKKKHEYNVEKQMNKCQLVWEGTAIEKTFSDWKFHLFKTET
EAQEFLRKSNIEHYWNLAKSRSLLEED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010674XLOC_010674Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019056TCONS_00019056Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010541DUF1115
IPR013881Pre-mRNA_splic_Prp3
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 32..52
NoneNo IPR availableCOILSCoilCoilcoord: 96..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..121
IPR010541Domain of unknown function DUF1115PFAMPF06544DUF1115coord: 136..268
e-value: 3.7E-43
score: 147.0
IPR013881Pre-mRNA-splicing factor 3PFAMPF08572PRP3coord: 5..113
e-value: 4.6E-49
score: 167.1

Blast
[Close]
BLAST of TCONS_00019056-protein vs. Swiss-Prot (Human)
Match: PRPF3 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens GN=PRPF3 PE=1 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 5.652e-99
Identity = 162/275 (58.91%), Postives = 202/275 (73.45%), Query Frame = 0 
Query:    1 ELFTGVTNLVEHPIAKDAPSQPKSMPNMPVFLTKKERKKIRTQRRREEEKEKNVKIRLGLEPPPPPKVKISNLMRVLASEAVQDPTKVEAHVRAQMAARQKKHEQANEERKLTKEQRTEKKIKKLKEDTSLGVHIAVYSLLDLSNPSKKFKVDTNATQLYLTGSVLITKELVLVIAEGGPKSQKKFKRLMMHRIKWDEDTAQGRRQDKIDKKKHEYNVEKQMNKCQLVWEGTAIEKTFSDWKFHLFKTETEAQEFLRKSNIEHYWNLAKSRSLLE 275
            E + G+TNLVEHP   + P    +   + V+LTKKE+KK+R Q RRE +KE   K+RLGL PPP PKV+ISNLMRVL +EAVQDPTKVEAHVRAQMA RQK HE+AN  RKLT EQR  KKIKKLKED S GVHI+VY + +LSNP+KKFK++ NA QLYLTG V++ K++ +V+ EGGPK+QKKFKRLM+HRIKWDE T+  +  D  +  +      K+ NKC LVWEGTA +++F + KF    TE  A+E  +K   EHYW+LA S S+LE
Sbjct:  409 EDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAV---KKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLE 680
The following BLAST results are available for this feature:
BLAST of TCONS_00019056-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRPF35.652e-9958.91U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo... [more]
back to top