TCONS_00018670-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018670-protein
Unique Name	TCONS_00018670-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	708

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018670-protein ID=TCONS_00018670-protein|Name=TCONS_00018670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=708bp
MGKKKLQEMNVDEFMKHGIDSDQSDQEESELLEEESLLADEGKHQRKNEK
KDESNTGSAESTNQTKGKSHKAQLERLKEKDPEFFKYLKENDEELLEFSA
EEEDEDSDADDDQNDPDDEKDDDESEDIDGNDPEEEEEEEDKSTTVTHQM
IADWKADLEKDKLKTLKTVMSAFHASVTVMAPTEEEPSKKLRFSAKEGSV
FNSLATLCLKHSIRILDKNIQYSKEKKGKSTSLPSTSKNWGKIKVTIKQY
MMDLLQLLRQMSESSMLAIILRHCQLLAPYFCCFPKILKMLIKRLIRMWS
GGEEHVRVLAFMCVRKSLTLQPNLFEFVLKKMYFGFVQNTKFVTPKTKPM
LIFMQNSLVEMFSLNETTTYQHAFIYIRQLAIHLRNAITVKKKDGHLAVY
NWQFISCLQLWSRVIGELHGEILKPLVYPIVQITIGVLRLVPSARYYPIR
FQCIDILNYISEKTGVYIPTASFVLEAIESKEFLKKPATSDKSPDLKSVL
KVSKSQVTSKAFQDAIADLSFESLLEHYVIYSNSIAFPELIFPVCHRLKR
LSKTCKVFKLRKDMKTLVDKIQKHGESLNKERNNVNFSPKDTDQVREWEE
KQKAKKNSLDQFFATWKEMKSVTANEADDDDVTKEDGEEADEEEIGGRKT
KSNTRKRKGQPTAVEKDDSKKTDAPKSKKSKKKTKQPSRQPKNDEEDVLE
DFQFSDDE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010445	XLOC_010445	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018670	TCONS_00018670	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005343	Noc2
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005343	Nucleolar complex protein 2	PFAM	PF03715	Noc2	coord: 324..616 e-value: 2.1E-108 score: 362.1
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 54..519 e-value: 1.1E-4 score: 20.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 624..708
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 85..221 coord: 418..644 coord: 248..382

Blast

[Close]

BLAST of TCONS_00018670-protein vs. Swiss-Prot (Human)
Match: NOC2L (Nucleolar complex protein 2 homolog OS=Homo sapiens GN=NOC2L PE=1 SV=4)

HSP 1 Score: 394.045 bits (1011), Expect = 6.877e-127
Identity = 228/659 (34.60%), Postives = 372/659 (56.45%), Query Frame = 0

Query:    3 KKKLQEMNVDEFMKHGIDSDQSDQEESELLEEESLLADEGKHQRKNEKKDESNTGSAESTNQTKGKS--HKAQLERLKEKDPEFFKYLKENDEELLEFSAEEEDEDSDAD-----DDQNDPDDEKDDDESEDIDGNDPEEEEEEEDKSTTVTHQMIADWK-ADLEKDKLKTLKTVMSAFHASVTVMAPTEEEPSKKLRFSAKEGSVFNSLATLCLKHSIRILDKNIQYSKEKKGKSTSL-PSTSKNWGKIKVTIKQYMMDLLQLLRQMSESSMLAIILRHCQLLAPYFCCFPKILKMLIKRLIRMWSGGEEHVRVLAFMCVRKSLTLQPNLF-EFVLKKMYFGFVQNTKFVTPKTKPMLIFMQNSLVEMFSLNETTTYQHAFIYIRQLAIHLRNAITVKKKDGHLAVYNWQFISCLQLWSRVIGELH-GEILKPLVYPIVQITIGVLRLVPSARYYPIRFQCIDILNYISEKTGVYIPTASFVLEAIESKEFLKKPA-TSDKSPDLKSVLKVSKSQVTSKAFQDAIADLSFESLLEHYVIYSNSIAFPELIFPVCHRLKRLSKTCKVFKLRKDMKTLVDKIQKHGESLNKERNNVNFSPKDTDQVREWEEKQKAKKNSLDQFFATWKEMKSVTANEADDDDVTKEDGEEADEEEIGGRK 649
            K++L E+ VDEF+  G DS+   + E+    E          + +   +     G + S ++ KG++  HK QL RLK++DPEF+K+L+END+ LL FS  +  E+ +       D   +  +E+D  E  +     P   + +++ S  VT  M+  WK A  ++   K    V+ AF A+V      ++E ++  +F   + + FN+L T C++  I  L K + + K  K  S  L PS+S  WGK++V IK Y+   +QL+  +SE+++LA +LRH  +L P F  FPK  +ML+KR++ +WS GEE +RVLAF+ + +    + + F   VLK+MY  +V+N KF +P   P + FMQ +L E+ +L     YQHAF+YIRQLAIHLRNA+T +KK+ + +VYNWQ++ CL LW RV+      E L+PLVYP+ Q+ IG ++L+P+AR+YP+R  CI  L  +S  +G +IP   F+LE  +  +F +KP   S K  +   +LK+S   +  KA++D + +  ++  LE+    ++ I FPEL+ PV  +LK   + CKV    + ++ L+ K+Q++   +   R  V+F   +   V  WE+  + +   L  +++ W++++     E   +   KE  E+ +  EI  RK
Sbjct:    8 KRRLAELTVDEFLASGFDSESESESENSPQAE--------TREAREAARSPDKPGGSPSASRRKGRASEHKDQLSRLKDRDPEFYKFLQENDQSLLNFSDSDSSEEEEGPFHSLPDVLEEASEEEDGAEEGEDGDRVPRGLKGKKN-SVPVTVAMVERWKQAAKQRLTPKLFHEVVQAFRAAVATTR-GDQESAEANKFQVTDSAAFNALVTFCIRDLIGCLQK-LLFGKVAKDSSRMLQPSSSPLWGKLRVDIKAYLGSAIQLVSCLSETTVLAAVLRHISVLVPCFLTFPKQCRMLLKRMVIVWSTGEESLRVLAFLVLSRVCRHKKDTFLGPVLKQMYITYVRNCKFTSPGALPFISFMQWTLTELLALEPGVAYQHAFLYIRQLAIHLRNAMTTRKKETYQSVYNWQYVHCLFLWCRVLSTAGPSEALQPLVYPLAQVIIGCIKLIPTARFYPLRMHCIRALTLLSGSSGAFIPVLPFILEMFQQVDFNRKPGRMSSKPINFSVILKLSNVNLQEKAYRDGLVEQLYDLTLEYLHSQAHCIGFPELVLPVVLQLKSFLRECKVANYCRQVQQLLGKVQENSAYICSRRQRVSFGVSEQQAVEAWEKLTREEGTPLTLYYSHWRKLRD---REIQLEISGKERLEDLNFPEIKRRK 652

The following BLAST results are available for this feature:

BLAST of TCONS_00018670-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018670-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NOC2L	6.877e-127	34.60	Nucleolar complex protein 2 homolog OS=Homo sapien...	[more]

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TCONS_00018670-protein (polypeptide) - C. hemisphaerica