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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026827 ID=TCONS_00026827|Name=TCONS_00026827|organism=Clytia hemisphaerica|type=transcript|length=2017bp
CGGGtctaatgcacaaaaaaatttattgttttacaAGCAAAATAAGGCGT
CACTTAAAACGTAAAAGTCCTAGAGTTAAGTACTGAATGATTATGATAGG
CTGAGATATATTTCACAAAATGATccacaaatatatattttttataggaG
CAGTTTCATAAAACGGTTGATAGGAACGATCTCTTGCTAGGCTTGTCTTT
GATACCTAAAGGCTTTTGATTACTTTTACGTACTTTTCCGAGTaggtttt
ttgattaaaaatatccgaaaaataaTCTTCTAGCTAACGGGTGGTATCCA
ATCATAGGGCTATTTGAATGGTGGCGAAATCTTGAGTAATTTGCTCTTTC
CCTTTTCAGGAATCCAAAATTCGCTGGCGTAAATTTTGTGAGACTCCTCA
AAATCCGCTACAGTAAGTAATCAAgcataaataaataaacttcACTTTAA
aatctgtttttcttttcaaaaaaaaataaaagtcgtaataaaatataaat
actGGCAGGAACTTGGcgacttttttctttctttataaatatattacaaa
aaaacaacacTCAGAAAGAGGTATTTCACTTTTCGTTTTCTAGTCATTTA
AAAATACACATTGGTTGTCTTTGAGGAAAAATCCAGACGCCTTTGATTGT
GATCAATTTTCAGCAATCCAAGGTAATATAGTTTCTATGAGAATGTCATT
ATTATGTCGCAGGATTTTTCCAAAGGCAACCAATGTTTTAGATACTAGAT
TTTTAGGgggaaaatgcattaaaaagatataaaaCTATTGCCATTAGAAA
AGCTATAGAGAGATTTTTCCATAACACCTTGTCCTTATTAAAGTTAAGTA
CCAATCTTTAAACATTTCGCTCCTCTCATTTTCTGATAGAAGTGTCCTCA
AATCTAGCTTCTTCCTTTTCGTTAACAATTTCTCCTTTAGCCAGTCCTCA
GTGCATTTTTTAAAACGATGGCTATTGTTTTCGATTTTGGTACTGCCAAG
AatctttcttgtattttttaaaatttgactatAATCTTTAGCATCCAAGC
CAATTTGTCCTGTACTATTATTACTACTTTGATTATTAGCTGCTTCACTT
GATTTCAAGTTCTTTGTTTTTTGTTCTTCATTAAATGAAGAAAAGAATGA
GGTGTAAAATTCCATTGCGTCTTTCTTGGATTTGATTTGAGTATTAGCAC
CACTACTGGCACCCGTTTCGCCTTCAATAGTTTCTAAGTTGCTTCCTCCA
CTTTTACTGCCAAAACCAAAACGTTTTCCTAAAGAACCGAATGCATTTTT
TGATCTCTTAGTAGGTATACCGCCTCCGGCGCCCGGTATTCCGCCTCCAG
CGCCCGTATTAGtcctttttgttttcatacTTGTCTGACGCCTCCATCCA
AACGTTGGCCCACTACCAAATGGCAAAGTCCTCGCAAGATGTACCAAATA
AAGTAGATAGATTAATGTGCCGTGTATTCTCATCCTATATTTTCTatatt
aaaaaagtttctaaaatttcaatCGATATTCATAAGAATTCAACCATCCA
AAATGAAACCAAACAATAAATCTACTTTGAAGAGCaagaaaaaaccaaaa
aacaaaaacaattctcTTTCTCTCCTTATCGTTGTCCAATTTACTTTCCG
ATTGCAGCTCGTTTGATTCTTGTTGCACGTGGGGTTGTAATAATGCACAA
ATTTGAAGACCAGATTtcaacaaaatgtaaacaaattggATTAAAGACAC
CCTCTGTTCGATGTCAATGCAATTAAGGTATGCGTTTAATTCGTTACTTT
TTCTGTGTCGTTTTTTTGTCCAATCTGCTTTTCTTCTACCTCTTTTGTTG
TGTTTTGTGTTGTATTTTTGTATCGAGTTAACCAAATCTTATATTCGTTT
TGTGTGTAATGCAACTTGACGGAGAATGTAATGTCGTTCAATgaagtgta
attttttttatgtgacactaaaatggaaaaaaaaataattggaaaaatat
taaTAAGTAGATCAATT Run BLAST on NCBI transcript from alignment at sc0000589:170329..172345- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026827 ID=TCONS_00026827|Name=TCONS_00026827|organism=Clytia hemisphaerica|type=transcript|length=2017bp|location=Sequence derived from alignment at sc0000589:170329..172345- (Clytia hemisphaerica)
CGGGTCTAATGCACAAAAAAATTTATTGTTTTACAAGCAAAATAAGGCGT
CACTTAAAACGTAAAAGTCCTAGAGTTAAGTACTGAATGATTATGATAGG
CTGAGATATATTTCACAAAATGATCCACAAATATATATTTTTTATAGGAG
CAGTTTCATAAAACGGTTGATAGGAACGATCTCTTGCTAGGCTTGTCTTT
GATACCTAAAGGCTTTTGATTACTTTTACGTACTTTTCCGAGTAGGTTTT
TTGATTAAAAATATCCGAAAAATAATCTTCTAGCTAACGGGTGGTATCCA
ATCATAGGGCTATTTGAATGGTGGCGAAATCTTGAGTAATTTGCTCTTTC
CCTTTTCAGGAATCCAAAATTCGCTGGCGTAAATTTTGTGAGACTCCTCA
AAATCCGCTACAGTAAGTAATCAAGCATAAATAAATAAACTTCACTTTAA
AATCTGTTTTTCTTTTCAAAAAAAAATAAAAGTCGTAATAAAATATAAAT
ACTGGCAGGAACTTGGCGACTTTTTTCTTTCTTTATAAATATATTACAAA
AAAACAACACTCAGAAAGAGGTATTTCACTTTTCGTTTTCTAGTCATTTA
AAAATACACATTGGTTGTCTTTGAGGAAAAATCCAGACGCCTTTGATTGT
GATCAATTTTCAGCAATCCAAGGTAATATAGTTTCTATGAGAATGTCATT
ATTATGTCGCAGGATTTTTCCAAAGGCAACCAATGTTTTAGATACTAGAT
TTTTAGGGGGAAAATGCATTAAAAAGATATAAAACTATTGCCATTAGAAA
AGCTATAGAGAGATTTTTCCATAACACCTTGTCCTTATTAAAGTTAAGTA
CCAATCTTTAAACATTTCGCTCCTCTCATTTTCTGATAGAAGTGTCCTCA
AATCTAGCTTCTTCCTTTTCGTTAACAATTTCTCCTTTAGCCAGTCCTCA
GTGCATTTTTTAAAACGATGGCTATTGTTTTCGATTTTGGTACTGCCAAG
AATCTTTCTTGTATTTTTTAAAATTTGACTATAATCTTTAGCATCCAAGC
CAATTTGTCCTGTACTATTATTACTACTTTGATTATTAGCTGCTTCACTT
GATTTCAAGTTCTTTGTTTTTTGTTCTTCATTAAATGAAGAAAAGAATGA
GGTGTAAAATTCCATTGCGTCTTTCTTGGATTTGATTTGAGTATTAGCAC
CACTACTGGCACCCGTTTCGCCTTCAATAGTTTCTAAGTTGCTTCCTCCA
CTTTTACTGCCAAAACCAAAACGTTTTCCTAAAGAACCGAATGCATTTTT
TGATCTCTTAGTAGGTATACCGCCTCCGGCGCCCGGTATTCCGCCTCCAG
CGCCCGTATTAGTCCTTTTTGTTTTCATACTTGTCTGACGCCTCCATCCA
AACGTTGGCCCACTACCAAATGGCAAAGTCCTCGCAAGATGTACCAAATA
AAGTAGATAGATTAATGTGCCGTGTATTCTCATCCTATATTTTCTATATT
AAAAAAGTTTCTAAAATTTCAATCGATATTCATAAGAATTCAACCATCCA
AAATGAAACCAAACAATAAATCTACTTTGAAGAGCAAGAAAAAACCAAAA
AACAAAAACAATTCTCTTTCTCTCCTTATCGTTGTCCAATTTACTTTCCG
ATTGCAGCTCGTTTGATTCTTGTTGCACGTGGGGTTGTAATAATGCACAA
ATTTGAAGACCAGATTTCAACAAAATGTAAACAAATTGGATTAAAGACAC
CCTCTGTTCGATGTCAATGCAATTAAGGTATGCGTTTAATTCGTTACTTT
TTCTGTGTCGTTTTTTTGTCCAATCTGCTTTTCTTCTACCTCTTTTGTTG
TGTTTTGTGTTGTATTTTTGTATCGAGTTAACCAAATCTTATATTCGTTT
TGTGTGTAATGCAACTTGACGGAGAATGTAATGTCGTTCAATGAAGTGTA
ATTTTTTTTATGTGACACTAAAATGGAAAAAAAAATAATTGGAAAAATAT
TAATAAGTAGATCAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026827-exon-sc0000589-1575043694:170329..172345 | TCONS_00026827-exon-sc0000589-1575043694:170329..172345 | Clytia hemisphaerica | exon |
| TCONS_00026827-exon-sc0000589-1510915933:170329..172345 | TCONS_00026827-exon-sc0000589-1510915933:170329..172345 | Clytia hemisphaerica | exon |
| TCONS_00026827-exon-sc0000589-1491911889:170329..172345 | TCONS_00026827-exon-sc0000589-1491911889:170329..172345 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000589 | supercontig | sc0000589:170329..172345 - |
Blast
The following BLAST results are available for this feature:
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