TCONS_00017805-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017805-protein
Unique NameTCONS_00017805-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017805-protein ID=TCONS_00017805-protein|Name=TCONS_00017805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MVNFTCITCHVLFQNADFQRDHYKTDWHRYNLKRKIVELQPVTEDDFDKK
VAFQTKKKDEKLSGGRTATECQACNKKFSSEKAYDNHVKSKKHREQEAKQ
AKNGSQEIKDDKKSKKDERKPCVKPKRGYMPPMEDTDDVIDDDSDEWEDV
EDDVISGGDVETDDEESEAIPQSNCLFCPHESISVEDNMRHMSKSHSFFM
PDLNFITDLEGFLIYLGAKVGDGKICLLCNNRSRQFRTIQACQEHMVDKG
HCMLDYQGDSMLEYADFYDFSSSYPDHNENMDVDSELSTNDGSMTVDPHT
LELVLPNGVRVGHRALRRYYNQNTVAEMFQTKNRAMITGVNTQYKALGLS
GATLTVAIRKKIVARKFEIRHRADQRMRIGMKGNSVLQTHFRKQVMNCG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009980XLOC_009980Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017805TCONS_00017805Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013087Znf_C2H2_type
IPR022755Znf_C2H2_jaz
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..35
e-value: 1.6E-4
score: 31.0
coord: 66..100
e-value: 3.4E-5
score: 33.2
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 69..93
e-value: 0.2
score: 20.7
coord: 224..251
e-value: 44.0
score: 7.6
coord: 4..28
e-value: 95.0
score: 4.6
coord: 173..196
e-value: 43.0
score: 7.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 71..93
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 69..98
score: 9.265
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 143..210
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 63..103
IPR022755Zinc finger, double-stranded RNA bindingPFAMPF12171zf-C2H2_jazcoord: 70..94
e-value: 5.4E-9
score: 36.0
NoneNo IPR availablePFAMPF12756zf-C2H2_2coord: 175..274
e-value: 6.6E-27
score: 93.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..141

Blast
[Close]
BLAST of TCONS_00017805-protein vs. Swiss-Prot (Human)
Match: ZN622 (Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.928e-65
Identity = 116/264 (43.94%), Postives = 162/264 (61.36%), Query Frame = 0 
Query:  143 DSDEWEDVEDDVISGGDVETDDEESE--------AIPQSNCLFCPHESISVEDNMRHMSKSHSFFMPDLNFITDLEGFLIYLGAKVGDGKICLLCNNRSRQFRTIQACQEHMVDKGHCMLDYQGDSMLEYADFYDFSSSYPDHNENMDVD-SELSTNDGSMTVDPHTLELVLPNGVRVGHRALRRYYNQ--NTVAEMFQTKNRAMITGVNTQYKALGLSGATLTVAIRKKIVARKFEIRHRADQRMRIGMKGNSVLQTHFRKQV 395
            DSDE  + ED       VE D EE E        AIP ++CLFC H S S+  N+ HM+K HSFF+PD+ +++D++G + YLG KVG GKICL CN + + F + +A Q HM DK HC L   GD+ LE+ADFYDF SSYPDH E  D + +E   ++ ++  D  T+EL+LP+G RVGHR+L RYY Q       +   KNR  +  V  QY+ALG +G+T    +R++ +  ++  R ++   ++ GMK N+  Q HFR QV
Sbjct:  214 DSDEELECEDTEAMDDVVEQDAEEEEAEEGPPLGAIPITDCLFCSHHSSSLMKNVAHMTKDHSFFIPDIEYLSDIKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHKEGEDPNKAEELPSEKNLEYDDETMELILPSGARVGHRSLMRYYKQRFGLSRAVAVAKNRKAVGRVLQQYRALGWTGSTGAALMRERDM--QYVQRMKSKWMLKTGMKNNATKQMHFRVQV 475

HSP 2 Score: 115.931 bits (289), Expect = 1.976e-28
Identity = 57/118 (48.31%), Postives = 79/118 (66.95%), Query Frame = 0 
Query:    1 MVNFTCITCHVLFQNADFQRDHYKTDWHRYNLKRKIVELQPVTEDDFDKKVAFQTKKKDEKLSGGRTATECQACNKKFSSEKAYDNHVKSKKHREQEAK--QAKNGSQEIKDDKKSKK 116
            M  +TCITC V F++AD QR HYKTDWHRYNL+RK+  + PVT + F ++V  Q    +E+  G  +AT C  C+KKF+S  AY+NH+KS++H E E K  QA N   E+ ++K  +K
Sbjct:    1 MATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEEESKG--SATYCTVCSKKFASFNAYENHLKSRRHVELEKKAVQAVNRKVEMMNEKNLEK 116
The following BLAST results are available for this feature:
BLAST of TCONS_00017805-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN6222.928e-6543.94Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 ... [more]
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