TCONS_00017310-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00017310-protein
Unique NameTCONS_00017310-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00017310-protein ID=TCONS_00017310-protein|Name=TCONS_00017310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
MDRSTCSICADYLSISDCTACPCGHTFHYNCIIRWKKESSTCPQCRVRFR
EPIKLFFEQNANQTIDECDASQLKNEIRDLKCTIQQKDVSMNTIKEQSLS
MQKDLNHKKEEVVSLGTLLRNCQGTNDALKRQLSYLEKYKTEAQRARAKA
ASVENELINFKSISELVKGERHAVEAMVKNYSDTPDAVNVVSTSYVLLKK
EYDKLKDSKKKIESEKKTYRRQAESASTEVFESQQKVDTLTKDLKHLNEI
NKGLQTKLKKLEQAFSSPSPRSSAIKRFMMESPAPMDLKRQCLTANSNIA
EIAEEQTNNDGSFILFDGPTSDDVLSTTPPVVDTLNISDDNSMEDEDKEL
IDEFGLRCVGTTSMCKRDPLKEINKNTTTIINNKFSVKSQKSKLERTASS
DFPHLKKGFNGMGGQSKVLYIPKKTSGFKKPAPIKTETTRKLKIPKNNTK
MTNFFQKPK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009686XLOC_009686Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00017310TCONS_00017310Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 237..264
NoneNo IPR availableCOILSCoilCoilcoord: 195..229
NoneNo IPR availableCOILSCoilCoilcoord: 136..156
NoneNo IPR availableGENE3D1.20.5.320coord: 58..167
e-value: 6.7E-4
score: 19.1
NoneNo IPR availableGENE3D1.20.5.1000coord: 195..266
e-value: 1.5E-5
score: 24.4
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 4..52
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 6..45
e-value: 2.6E-6
score: 37.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 5..46
e-value: 1.2E-9
score: 38.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 6..46
score: 13.124
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 5..49
e-value: 3.37412E-11
score: 57.4556
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..57
e-value: 1.5E-13
score: 49.5

Blast
[Close]
BLAST of TCONS_00017310-protein vs. Swiss-Prot (Human)
Match: TRAIP (E3 ubiquitin-protein ligase TRAIP OS=Homo sapiens GN=TRAIP PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.322e-36
Identity = 120/464 (25.86%), Postives = 229/464 (49.35%), Query Frame = 0 
Query:    3 RSTCSICADYLSIS-DCTACPCGHTFHYNCIIRW--KKESSTCPQCRVRF--REPI-KLFFEQNANQTIDECDASQLKNEIRDLKCTIQQKDVSMNTIKEQSLSMQKDLNHKKEEVVSLGTLLRNCQGTNDALKRQLSYLEKYKTEAQRARAKAASVENELINFKSISELVKGERHAVEAMVKNYSDTPDAVNVVSTSYVLLKKEYDKLKDSKK-------KIESEKKTYRRQAESASTEVFESQQKVDTLTKDLKHLNEINKGLQTKLKKLEQAFSSPSPRSSAIKRFMMESPAPMD----LKRQCLTANSNIAEIAEEQTNNDGSFILFDGPTSDDVLSTTPPVVDTLNISDDNS-MEDEDKELIDEFGLRCVGTTSM----CKRDPLKEINKNTTTIINNKFSVKSQKSKLERTASSDFPHLKKGFNGMGGQSKVLYIPKKTSGFKKPAPIKTETTRKLKI 444
            R+ C+IC+D+   S D  A  CGHTFH  C+I+W     S TCPQCR++   R  I KLFF+  A +  +  DA  LKNE+ +++  + QKD      +    +++  L  +   VVSL   L   +     LK+Q+ YLE+ + E ++A+ +A  + +++   + I  L++ +R  VE M+++      AV  ++   V LKKEY+ LK+++K       K+  +  + R + ++  +E+ +++ ++ +  KDL+  ++    L+ KL  L++  + P   S  + R ++ESPAP++    L+R     + ++          + +F +   P      S+     + L +   +S ++D  K++    G R     S+    C  +P +E+       + N    + Q  +    +S     ++ GF+G+GG++K  +I    +   +P P+K +T  K ++
Sbjct:    4 RALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIINKLFFDL-AQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVSLQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEVEEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVYSELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVEVNLKLRRPSFRDDIDL----------NATFDVDTPPARPS--SSQHGYYEKLCLEKSHSPIQDVPKKICK--GPRKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGLGGRTK--FIQPTDTVMIRPLPVKPKTKVKQRV 450
The following BLAST results are available for this feature:
BLAST of TCONS_00017310-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAIP1.322e-3625.86E3 ubiquitin-protein ligase TRAIP OS=Homo sapiens ... [more]
back to top