TCONS_00016512-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016512-protein
Unique Name	TCONS_00016512-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1174

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016512-protein ID=TCONS_00016512-protein|Name=TCONS_00016512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1174bp
MLDCFCISQNIHLSFHTSFLFLFCKIPPNVSGKTTNMADAIIENRPDSPG
KISIQSIDIPIGRKSPLVVRLSVEEVDEIAKKLLDGRFYLSALEFHTELI
EAGKELSRLKEFFSNPGNFEIQSKLDPLALIRKTASNLTLDSIDDFARFS
DDGLHVADERITVLEYELRKAKETIHDLREQITEMTADRKEKDTQSLTSQ
SEETANQYDIRTMNFLVNSYLLKREYKFTSITFSDEIGDQDLDDWEDVGL
NAAQPPDLLTLYRDYSRHVVDPMKMRNQEIDDLQNTIKKLEEQCSTLNEE
VSREREEKNELSKEMENTRSKPWFKNTTIEKLKNEDDTTSISSVSSKESV
DLPKDHPDISNLNISQDGIDDSIETMLGNSGEENRSILNTTEEIIDVLGN
DKNDQSESQQRPPSNLSTSSTGTDSGREPVHVEVENISNECTVSRQFIDL
LFSTVHIKGESRLAQEVSRDEEVVPVDVIAKALPNIAPNVLLNKREELIP
LILCAACFHDDNKIRDELLHMLFNLIKKPDKEQRKIIIDGCVAFAKRVGG
TRIEAELLPQCWEQINHKFAERRLLVSETCGFIAPYMPVELSGSLVFSML
AQMLQDDRSEEVRSSVVRSLALIIIFITDPTKYKKVYPLLECGLKDIVED
VVFDTKEIFLPVLGLWASKMNKFQSHMLTQFLTNCKQALRTWNEATDLSQ
SVDGGDQSARLLVAENSFSTYIDCLVRMVTTMFVDVLSSAPFANDEITDE
YSKDMDESRLPNMKNALQNPRILIGNDLKFNNLVNKFDDVCRDPKKEDIW
TELDWVCKYCITETCHMAGLMFENTLFIEKTVCYLCTICRVFGKNYTKSQ
LIPFFQRMMRMTEASAFLNDVSPVASPLLTIFLCGVLANFHEEEQEKRLF
NFTKQCLVQIATQNLSMDYLILSIQILSRNEVLQMGLIETLREAIIYPVA
EVRACIATLFASLIKSANQQALSSHVAPAIITLSNDRDMTVRTASMPALG
ATMEVISDKNLLDKVCMQLQTILEDEESQQCIPLLKKIIVTFTKIMPGIE
NKIRDDFILPRLKVMSERNTEVEDLADRLEIAEELIIALQAALCCFLSRD
VIQAFVLPTLKTLENNLKDFSPETVDSVLLLQKDAESKCEEDKLSTGSGA
STSTSSKLFGGISSRFFKKKHEES

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009232	XLOC_009232	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016512	TCONS_00016512	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR006594	LisH
IPR021133	HEAT_type_2
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1062..1092
None	No IPR available	COILS	Coil	Coil	coord: 161..195
None	No IPR available	COILS	Coil	Coil	coord: 273..321
None	No IPR available	GENE3D	1.20.5.1000		coord: 288..347 e-value: 0.0043 score: 16.5
None	No IPR available	GENE3D	1.20.5.50		coord: 271..287 e-value: 0.007 score: 15.6
None	No IPR available	GENE3D	1.10.1660.10		coord: 121..213 e-value: 0.024 score: 14.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 299..318
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1139..1158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 402..428
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 335..367
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 476..1133 e-value: 1.0E-20 score: 73.4
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 209..241 score: 8.192
IPR021133	HEAT, type 2	PROSITE	PS50077	HEAT_REPEAT	coord: 976..1014 score: 10.096
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 824..1029 coord: 780..794 coord: 495..690

Blast

[Close]

BLAST of TCONS_00016512-protein vs. Swiss-Prot (Human)
Match: K1468 (LisH domain and HEAT repeat-containing protein KIAA1468 OS=Homo sapiens GN=KIAA1468 PE=1 SV=2)

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 406/1187 (34.20%), Postives = 618/1187 (52.06%), Query Frame = 0

Query:   45 RPDSPGKISIQSIDIPIGRKSPLVVRLSVEEVDEIAKKLLDGRFYLSALEFHTELIEAGKELSRLKEFFSNPGNFEIQSKLDPL--------------------------ALIRKTASNLTLDSIDDFARFSDDGLHVADERITVLEYELRKAKETIHDLREQIT---EMTADRKEKDTQSLTSQSEETANQYDIRTMNFLVNSYLLKREYKFTSITFSDEIGDQDLDDWEDVGLNAAQPPDLLTLYRDYSRHVV--------------DPMKMRNQEIDDLQNT------------IKKLEEQCSTLNEEVSREREEKNELSKEMENTRSKPWFKNTTIEKLKNEDDTTSISSVSSKESVDLPKDHPDISNLNISQDGIDDSIETMLGNSGEENRSILNTTEEIIDVLGNDKNDQSESQQRPPSNLSTSSTGTDSGREPVHVEVENISNECTVSRQFIDLLFSTVHIKGESRLAQEVSR--DEEVVPVDVIAKALPNIAPNVLLNKREELIPLILCAACFHDDNKIRDELLHMLFNLIKKPDKEQRKIIIDGCVAFAKRVGGTRIEAELLPQCWEQINHKFAERRLLVSETCGFIAPYMPVELSGSLVFSMLAQMLQDDRSEEVRSSVVRSLALIIIFITDPTKYKKVYPLLECGLKDIVEDVVFDTKEIFLPVLGLWASKMNKFQSHMLTQFLTNCKQALRTWNEATDLSQSVDGGDQSARLLVAENSFSTYIDCLVRMVTTMFVDVLSSAPFANDEITDEYSKDMDESRLPNMKNALQNPRILIGNDLKFNNLVNKFDDVCRDPKKEDIWTELDWVCKYCITETCHMAG-LMFENTLFIEKTVCYLCTICRVFGKNYTKSQLIPFFQRMMRMTEA---SAFLNDVSPVASPLLTIFLCGVLANFHEEEQEKRLFNFTKQCLVQIATQNLSMDYLILSIQILSRNEVLQMGLIETLREAIIYPVAEVRACIATLFASLIKSANQQALSSHVAPAIITLSNDRDMTVRTASMPALGATMEVISDKNLLDKVCMQLQTILEDEESQQCIPLLKKIIVTFTKIMPGIENKIRDDFILPRL-KVMSERNTEVEDLADRLEIAEELIIALQAALCCFLSRDVIQAFVLPTLKTLENNLKDFSPETVDSVLLLQKDAESKCEEDKLSTGSGASTSTSSKLFGGISSRFFKK 1169
            RP  PG+ S  ++ +    ++P   RLS+   D IA +LL  ++ L+ALE HTEL+E+G+EL RL+++FSNPGNFE QS   P                             + +  S  TLDS+D FAR+SDDG    DE++ VLE+ELRKAKETI  LR  +T   E     +E+     + + +E     + R +NFLVN +LLK  YK TSITFSDE  DQD + W+DVGLN  +PPDLL LYRD+  H V              D ++     I +L  T            ++KLE++ S LN E     E+   L  EM+  +++ +      + ++       +  +  K+S D    HPD+   N S  G +  I   + +  +      N+              + E +  PPS+LS+  T        VH +  N      +S  F   L S   +  +SRL  EVSR  D E   + ++ + LP+I PNVLL KREELIPLILC AC H + K RD+LLH+LFNLIK+PD EQR++I+ GCVAFA+ VG TR+EAELLPQCWEQINHK+ ERRLLV+E+CG +APY+P E+  SLV SML QML +D+++ VR +V++SL +I+ +I DP KY + + LL   L D  E VV  T ++FLP    W +++   QSH++   L   ++ LR      D                 E+    Y+  L  ++ ++F  VL +APF++          ++ +R P   + LQ+   +IG+  +   L+  +D      +    W  L WV    + +   + G +   +T  + +   +   +CR FGK +T +++ P FQ ++R++E    S+  N V   A+  + I+  GVL  + +EE  K L  F +  +  ++  +  +D L  S   L  N      L+  L   +++  A VR   A +F   ++  ++  +   VAPA++TLS+D + +VR A++PA G  ME +  + LL++V MQL + LED + Q    L  +II TF ++ P  E + RD+F++P L K+    N ++ D + RL+IA  L  A  A  CCF+S D++    LP L+ L  +++  SPE    +  + K+ E K E   +    G+ +  +S +     ++F  K
Sbjct:   68 RPGLPGEASAAAVALGGTGETP--ARLSI---DAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAGSISTLDSLD-FARYSDDGNRETDEKVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPIISNLPPTLETPQPAENSMLVQKLEDKISLLNSEKWSLMEQIRRLKSEMDFLKNEHFAIPAVCDSVQ-----PPLDQLPHKDSED-SGQHPDV---NSSDKGKNTDIHLSISDEADSTIPKENSPNSF---------PRREREGMPPSSLSSKKT--------VHFDKPNRK----LSPAFHQALLSFCRMSADSRLGYEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYHQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLILTLLNKIEKLLREGEHGLD-----------------EHKLHMYLSALQSLIPSLFALVLQNAPFSSKAKLHGEVPQIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEQ-EGTTGWESLLWVVNQLLPQLIEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKAT--VPIYATGVLTCYIQEEDRKLLVGFLEDVMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCTAARMFELTLRGMSEALVDKRVAPALVTLSSDPEFSVRIATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQHSLHTEIIKTFGRVGPNAEPRFRDEFVIPHLHKLALVNNLQIVD-SKRLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRCLRTDMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDTKTKFLNK 1197

The following BLAST results are available for this feature:

BLAST of TCONS_00016512-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016512-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
K1468	0.000e+0	34.20	LisH domain and HEAT repeat-containing protein KIA...	[more]

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TCONS_00016512-protein (polypeptide) - C. hemisphaerica