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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016512 ID=TCONS_00016512|Name=TCONS_00016512|organism=Clytia hemisphaerica|type=transcript|length=6204bpRun BLAST on NCBI protein sequence of TCONS_00016512-protein >TCONS_00016512-protein ID=TCONS_00016512-protein|Name=TCONS_00016512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1174bp MLDCFCISQNIHLSFHTSFLFLFCKIPPNVSGKTTNMADAIIENRPDSPGRun BLAST on NCBI transcript from alignment at sc0000241:22690..61342+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016512 ID=TCONS_00016512|Name=TCONS_00016512|organism=Clytia hemisphaerica|type=transcript|length=38653bp|location=Sequence derived from alignment at sc0000241:22690..61342+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000241:22690..61342+ >TCONS_00016512 ID=TCONS_00016512|Name=TCONS_00016512|organism=Clytia hemisphaerica|type=CDS|length=105750bp|location=Sequence derived from alignment at sc0000241:22690..61342+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016512 vs. Swiss-Prot (Human)
Match: K1468 (LisH domain and HEAT repeat-containing protein KIAA1468 OS=Homo sapiens GN=KIAA1468 PE=1 SV=2) HSP 1 Score: 591.267 bits (1523), Expect = 0.000e+0 Identity = 400/1157 (34.57%), Postives = 597/1157 (51.60%), Query Frame = 2
Query: 1847 RPDSPGKISIQSIDIPIGRKSPLVVRLSVEEVDEIAKKLLDGRFYLSALEFHTELIEAGKELSRLKEFFSNPGNFEIQSKLDPL--------------------------ALIRKTASNLTLDSIDDFARFSDDGLHVADERITVLEYELRKAKETIHDLREQIT---EMTADRKEKDTQSLTSQSEETANQYDIRTMNFLVNSYLLKREYKFTSITFSDEIGDQDLDDWEDVGLNAAQPPDLLTLYRDYSRHVV--------------DPMKMRNQEIDDLQNT------------IKKLEEQCSTLXXXXXXXXXXXXXLSKEMENTRSKPWFKNTTIEKLKNXXXXXXXXXXXXXXXXDLPKDHPDISNLNISQDGIDDSIETMLGNSGEENRSILNTTEEIIDVLGNDKNDQSESQQRPPSNLSTSSTGTDSGREPVHVEVENISNECTVSRQFIDLLFSTVHIKGESRLAQEVSR--DEEVVPVDVIAKALPNIAPNVLLNKREELIPLILCAACFHDDNKIRDELLHMLFNLIKKPDKEQRKIIIDGCVAFAKRVGGTRIEAELLPQCWEQINHKFAERRLLVSETCGFIAPYMPVELSGSLVFSMLAQMLQDDXXXXXXXXXXXXLALIIIFITDPTKYKKVYPLLECGLKDIVEDVVFDTKEIFLPVLGLWASKMNKFQSHMLTQFLTNCKQALRTWNEATDLSQSVDGGDQSARLLVAENSFSTYIDCLVRMVTTMFVDVLSSAPFANDEITDEYSKDMDESRLPNMKNALQNPRILIGNDLKFNNLVNKFDDVCRDPKKEDIWTELDWVCKYCITETCHMAG-LMFENTLFIEKTVCYLCTICRVFGKNYTKSQLIPFFQRMMRMTEA---SAFLNDVSPVASPLLTIFLCGVLANFHEEEQEKRLFNFTKQCLVQIATQNLSMDYLILSIQILSRNEVLQMGLIETLREAIIYPVAEVRACIATLFASLIKSANQQALSSHVAPAIITLSNDRDMTVRTASMPALGATMEVISDKNLLDKVCMQLQTILEDEESQQCIPLLKKIIVTFTKIMPGIENKIRDDFILPRLKVMSERNTEVXXXXXXXXXXXXXXXXXXXXXCCFLSRDVIQAFVLPTLKTLENNLKDFSPETVDSVLLLQKDAESKCE 5134
RP PG+ S ++ + ++P RLS+ D IA +LL ++ L+ALE HTEL+E+G+EL RL+++FSNPGNFE QS P + + S TLDS+D FAR+SDDG DE++ VLE+ELRKAKETI LR +T E +E+ + + +E + R +NFLVN +LLK YK TSITFSDE DQD + W+DVGLN +PPDLL LYRD+ H V D ++ I +L T ++KLE++ S LN E E+ L EM+ + KN D + + HPD+ N S G + I + + + N+ + E + PPS+LS+ T VH + N +S F L S + +SRL EVSR D E + ++ + LP+I PNVLL KREELIPLILC AC H + K RD+LLH+LFNLIK+PD EQR++I+ GCVAFA+ VG TR+EAELLPQCWEQINHK+ ERRLLV+E+CG +APY+P E+ SLV SML QML +D+++ VR +V++SL +I+ +I DP KY + + LL L D E VV T ++FLP W +++ QSH++ L ++ LR D E+ Y+ L ++ ++F VL +APF++ ++ +R P + LQ+ +IG+ + L+ +D + W L WV + + + G + +T + + + +CR FGK +T +++ P FQ ++R++E S+ N V A+ + I+ GVL + +EE K L F + + ++ + +D L S L N L+ L +++ A VR A +F ++ ++ + VAPA++TLS+D + +VR A++PA G ME + + LL++V MQL + LED + Q L +II TF ++ P E + RD+F++P L ++ N + RL+IA L A A CCF+S D++ LP L+ L +++ SPE + + K+ E K E
Sbjct: 68 RPGLPGEASAAAVALGGTGETP--ARLSI---DAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAGSISTLDSLD-FARYSDDGNRETDEKVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPIISNLPPTLETPQPAENSMLVQKLEDKISLLNSEKWSLMEQIRRLKSEMD------FLKNEHFAIPAVCDSVQPPLDQLPHKDSEDSGQHPDV---NSSDKGKNTDIHLSISDEADSTIPKENSPNSF---------PRREREGMPPSSLSSKKT--------VHFDKPNRK----LSPAFHQALLSFCRMSADSRLGYEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYHQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLILTLLNKIEKLLREGEHGLD-----------------EHKLHMYLSALQSLIPSLFALVLQNAPFSSKAKLHGEVPQIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEQ-EGTTGWESLLWVVNQLLPQLIEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKAT--VPIYATGVLTCYIQEEDRKLLVGFLEDVMTLLSLSHAPLDSLKASFVELGANPAYHELLLTVLWYGVVHTSALVRCTAARMFELTLRGMSEALVDKRVAPALVTLSSDPEFSVRIATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQHSLHTEIIKTFGRVGPNAEPRFRDEFVIPHLHKLALVNNLQIVDSKRLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRCLRTDMEHLSPEHEVILSSMIKECEQKVE 1168 The following BLAST results are available for this feature:
BLAST of TCONS_00016512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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