TCONS_00014152-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014152-protein
Unique NameTCONS_00014152-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014152-protein ID=TCONS_00014152-protein|Name=TCONS_00014152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MSQQKDKKPLSPTQKKPDQKLFSSNRNQPTITNGQSKPSTPLSNSPNSAD
ISKLLEKVESMKKSEILSQLPSKITELCKNNNGASIMNDFTKIICGKAIK
DPEFATVAAQLCNACWIREQLNPLLRSPLLSAIQAEYKKRKELNREQFYG
LTVLLCELYNVLKVQHQPLKPLNNPVCDLLKDLVKEDHVSEDDAFYFFQE
MERVGRVIESDNRSNMDDIMTRVREICISDDQMLPSSKCRFVQLVELRAA
NWQLSQDTTAFYDDLSQDLMAKGQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007918XLOC_007918Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014152TCONS_00014152Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003890MIF4G-like_typ-3
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003723RNA binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.25.40.180coord: 50..268
e-value: 7.6E-22
score: 77.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
IPR003890MIF4G-like, type 3PFAMPF02854MIF4Gcoord: 53..249
e-value: 4.7E-12
score: 45.9
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 71..253

Blast
[Close]
BLAST of TCONS_00014152-protein vs. Swiss-Prot (Human)
Match: CTIF (CBP80/20-dependent translation initiation factor OS=Homo sapiens GN=CTIF PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.918e-18
Identity = 59/238 (24.79%), Postives = 120/238 (50.42%), Query Frame = 0 
Query:   43 SNSPNSADISKLLEKVESMK--KSEILSQLPSKITELCKNNNGASIMNDFTKIICGKAIKDPEFATVAAQLCNACWIREQLNPLLRSPLLSAIQAEYKKRKELNR---EQFYGLTVLLCELYNVLKVQ-HQPLKPLNNPVCDLLKDLVKEDHVSEDDAFYFFQEMERVGRVIESDNRSNMDDIMTRVRE--ICISDDQMLPSSKCRFVQLVELRAANWQ-LSQDTTAFYDDLSQDLMA 271
            + +P    + KL+E + SM+   S++ ++L + + E   + N   ++ +  + I  KA+ D  FA  AA+LC+   +        RS LL+ +Q ++  R+EL +   E++ G    LCE++  ++    +P + L  P+   L++L++   V ED       E++  GR++E      M +++   R+  +C S+  +   ++   ++++EL A +W  L+   T +Y+   Q L A
Sbjct:  364 TTTPQQNKMDKLIEILNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREELQQQDVERWLGFITFLCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLLEEQLPEMMTELLASARDKMLCPSESML---TRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA 598
The following BLAST results are available for this feature:
BLAST of TCONS_00014152-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTIF1.918e-1824.79CBP80/20-dependent translation initiation factor O... [more]
back to top