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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026631 ID=TCONS_00026631|Name=TCONS_00026631|organism=Clytia hemisphaerica|type=transcript|length=1072bp
aatttagaaatgagAAATTGGCTGTTTAAAATGGTGTCATTCctgctttc
aattttttttttactttttagggagttttcattttcagtactGTATTGGA
GATGGTTACTTGCGGAGTAAATAATTGTACCAAAGAAGCTGAGCAAAGAT
GCAGCAGATGTAAGAACAAGAACTATTGCTCTAAAGATTGCCAAGTAGCT
GACTGGAAAGCTCATAAAAAGTCATGTGGGAAAAAGCAAGACCAATCCCA
ACAACACTGTCAAGGAGGTGTTTCAATGTTTGATTTACTAAGAAACAAAA
CAGCTTGGTTTGAAAGTTCTGAAGGGGATAAAAAGTATGAATGGCTCATT
GATGCTTATCGATTAAGACTAGATGATGACTATGTTTGGGGTGGTGGCAA
TTTACACGGTTTATATGATGTTCAAATTCAGGATCTAGGAACCAATGCTC
GAAAACAACATATTATTAAAGATTTTatggtttttatgaaattggCTGTT
CAAAATGGTGTCATTCCTGCTACTGGATTCAACTTTGAGAAATGTTTACG
AGTTGGCGAAGAAAATTTAGGATTTGCTTTTGAGAAAAGTGATGCTACAG
AGAAATGGGGTTTTGGTGTAGGTATGCCCTTGCGTGGAATGGCAGAGCAT
GTTTATGGTACATCTTGCCAATACTCTGGGGATGAGATGAATGAAGCTGA
ACAGAAAGTTACTGACTGTATTGAATATGCTTTTAGGAGAGGTATAAAAA
ATGCAGATGCTTCTCTATTTAATGATATTGGTGGGAAAAATGCTTGgtta
aaactttataaagatatGGCTACACGGTTTCATTAAAGTTGATTGACtac
ctttaaaaatttttgttgtgttttgtaTATCAATGTTGCAGTTTTTTGCA
CGAAAATCTAGTTTTGCTATGGATTCaagaatatatatttgaatagtTAA
AAATTACTTTGGTGCTAGATTCAATGTTAATTATACTCAAAACAAGAACG
AAAACATATAAAATGCATACCTTGAGTGTACGTCCTTTTGGTATGCTTTT
AAACCATTTTAAACCATTTCAG Run BLAST on NCBI protein sequence of TCONS_00026631-protein >TCONS_00026631-protein ID=TCONS_00026631-protein|Name=TCONS_00026631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MVTCGVNNCTKEAEQRCSRCKNKNYCSKDCQVADWKAHKKSCGKKQDQSQ
QHCQGGVSMFDLLRNKTAWFESSEGDKKYEWLIDAYRLRLDDDYVWGGGN
LHGLYDVQIQDLGTNARKQHIIKDFMVFMKLAVQNGVIPATGFNFEKCLR
VGEENLGFAFEKSDATEKWGFGVGMPLRGMAEHVYGTSCQYSGDEMNEAE
QKVTDCIEYAFRRGIKNADASLFNDIGGKNAWLKLYKDMATRFH Run BLAST on NCBI transcript from alignment at sc0000580:105359..107872+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026631 ID=TCONS_00026631|Name=TCONS_00026631|organism=Clytia hemisphaerica|type=transcript|length=2514bp|location=Sequence derived from alignment at sc0000580:105359..107872+ (Clytia hemisphaerica)
aatttagaaatgagAAATTGGCTGTTTAAAATGGTGTCATTCctgctttc
aattttttttttactttttagggagttttcattttcagtactGTATTGGA
GATGGTTACTTGCGGAGTAAATAATTGTACCAAAGAAGCTGAGCAAAGAT
GCAGCAGATGTAAGAACAAGAACTATTGCTCTAAAGATTGCCAAGTAGCT
GACTGGAAAGCTCATAAAAAGTCATGTGGGAAAAAGCAAGACCAATCCCA
ACAACACTGTCAAGGAGGTGTTTCAATGTTTGATTTAATAAGAAACAAAA
CAGCTTGGTTTGAAAGTTCTGAAGGGGATAAAAAGTATGAATGGCTCATT
GATGCTTATCGATTAAGACTAGATGATGACTATGTTTGGGGTGGTGGCAA
TTTACATGGTTTATATGATGTTCAAATTCAGGATCTAGGAACCAATGCTC
GAAAACAACATATTATTAAAGATTTTatggtttttatgaaattggCTGTT
CAAAATGGTGTCATTCCTGCTACTGGATTCAACTTTGAGAAATGTTTACG
AGTTGGCGAAGAAAATTTAGGATTTGCTTTTGAGAAAAGTGATGCTACAG
AGAAATGGGGTTTTGGTGTAGGCATGCCCTTGCGTGGAATGGCAGAGCAT
GTTTATGGTACATCTTGCCAATACTCTGGGGATGAGATGAATGAAGCTGA
ACAGAAAGTTACTGACTGTATTGAATATGCTTTTAGGAGAGGTATAAAAA
ATGCAGATGCTTCTCTATTTAATGATATTGGTGGGAAAAATGCTTGgtta
aaactttataaagatatGGCTACACGGTTTCATTAAAGTTGATTGACtac
ctttaaaaaattttgttgtgTTTTGTATATCAATGTTGCAGTTTTTTGCA
CGAAAATCTAGTTTTGCTATGGATTCaagaatatatatttgaatagtTAA
AAATTACTTTGGTGCTAGATTCAATGTTAATTATACTCAAAACAAGAACG
AAAACATATAAAATGCATACCTTGAGTGTACGTCCTTTTGGTATGCTTTT
AAACCATTTTAAACCATTTCAGATAAAACAAGATTTCCCTCCTTatccaa
ttttcattttgaatttagctcttataattttaatttttgcttaaaagtaT
CATTTCCGCAAAACACCCCTAAAATACGTCCAATATTAGTTAATAGTTTT
ctatttggtcaaaattcaaaGATATCTGCGAAGGAAAATgagagaaaaat
tcaaaaaactatctaccaagaATAAACTGGCAAAGATGACGTTCTTATTG
ATGTTCTATCTCTTTTTCCGAGTTCTATAAGTAAACAATCCAGCCGCAGC
TTTCTTATACTTTGATACCCATATCTAGAAAGATAGAATAACCATTTGCA
TATATTTGAACACAAAATTCATGACATTAGAAGTTAAATAGACAGTGCTT
TTATTACTTTCCATTTTCGTTTTAGAAATTTATTAACTAAAGAAGATAAA
GTATGTCATGGTTGTGCCTTCAAATGCGAGAATCTTCATAAAtcacaaaa
gaaatgaaaacaacTATGGTTTTATCTGAAATGGTTTAAAAGCATATATG
TTTGACGTACACTCAAGGTATGCATTGTATATATTTTCGTTGACTGTCGT
TGataatagcgagattatgtgtctggaattctctacggctacggttaaaG
NTCAAGGAGGTGTTTCAATGTTTGATTTACTAAGAAACAAAACAGCTTGG
TTTGAAAGTTCTGAAGGGGATAAAAAGTATGAATGGCTCATTGATGCTTA
TCGATTAAGACTAGATGATGACTATGTTTGGGGTGGTGGCAATTTACACG
GTTTATATGATGTTCAAATTCAGGATCTAGGAACCAATGCTCGAAAACAA
CATATTATTAAAGATTTTatggtttttatgaaattggCTGTTCAAAATGG
TGTCATTCCTGCTACTGGATTCAACTTTGAGAAATGTTTACGAGTTGGCG
AAGAAAATTTAGGATTTGCTTTTGAGAAAAGTGATGCTACAGAGAAATGG
GGTTTTGGTGTAGGTATGCCCTTGCGTGGAATGGCAGAGCATGTTTATGG
TACATCTTGCCAATACTCTGGGGATGAGATGAATGAAGCTGAACAGAAAG
TTACTGACTGTATTGAATATGCTTTTAGGAGAGGTATAAAAAATGCAGAT
GCTTCTCTATTTAATGATATTGGTGGGAAAAATGCTTGgttaaaacttta
taaagatatGGCTACACGGTTTCATTAAAGTTGATTGACtacctttaaaa
atttttgttgtgttttgtaTATCAATGTTGCAGTTTTTTGCACGAAAATC
TAGTTTTGCTATGGATTCaagaatatatatttgaatagtTAAAAATTACT
TTGGTGCTAGATTCAATGTTAATTATACTCAAAACAAGAACGAAAACATA
TAAAATGCATACCTTGAGTGTACGTCCTTTTGGTATGCTTTTAAACCATT
TTAAACCATTTCAG Coding sequence (CDS) from alignment at sc0000580:105359..107872+ >TCONS_00026631 ID=TCONS_00026631|Name=TCONS_00026631|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at sc0000580:105359..107872+ (Clytia hemisphaerica)
ATGGTTACTTGCGGAGTAAATAATTGTACCAAAGAAGCTGAGCAAAGATG
CAGCAGATGTAAGAACAAGAACTATTGCTCTAAAGATTGCCAAGTAGCTG
ACTGGAAAGCTCATAAAAAGTCATGTGGGAAAAAGCAAGACCAATCCCAA
CAACACTGTCAAGGAGGTGTTTCAATGTTTGATTTACTAAGAAACAAAAC
AGCTTGGTTTGAAAGTTCTGAAGGGGATAAAAAGTATGAATGGCTCATTG
ATGCTTATCGATTAAGACTAGATGATGACTATGTTTGGGGTGGTGGCAAT
TTACACGGTTTATATGATGTTCAAATTCAGGATCTAGGAACCAATGCTCG
AAAACAACATATTATTAAAGATTTTatggtttttatgaaattggCTGTTC
AAAATGGTGTCATTCCTGCTACTGGATTCAACTTTGAGAAATGTTTACGA
GTTGGCGAAGAAAATTTAGGATTTGCTTTTGAGAAAAGTGATGCTACAGA
GAAATGGGGTTTTGGTGTAGGTATGCCCTTGCGTGGAATGGCAGAGCATG
TTTATGGTACATCTTGCCAATACTCTGGGGATGAGATGAATGAAGCTGAA
CAGAAAGTTACTGACTGTATTGAATATGCTTTTAGGAGAGGTATAAAAAA
TGCAGATGCTTCTCTATTTAATGATATTGGTGGGAAAAATGCTTGgttaa
aactttataaagatatGGCTACACGGTTTCATTAAATGGTTACTTGCGGA
GTAAATAATTGTACCAAAGAAGCTGAGCAAAGATGCAGCAGATGTAAGAA
CAAGAACTATTGCTCTAAAGATTGCCAAGTAGCTGACTGGAAAGCTCATA
AAAAGTCATGTGGGAAAAAGCAAGACCAATCCCAACAACACTGTCAAGGA
GGTGTTTCAATGTTTGATTTACTAAGAAACAAAACAGCTTGGTTTGAAAG
TTCTGAAGGGGATAAAAAGTATGAATGGCTCATTGATGCTTATCGATTAA
GACTAGATGATGACTATGTTTGGGGTGGTGGCAATTTACACGGTTTATAT
GATGTTCAAATTCAGGATCTAGGAACCAATGCTCGAAAACAACATATTAT
TAAAGATTTTatggtttttatgaaattggCTGTTCAAAATGGTGTCATTC
CTGCTACTGGATTCAACTTTGAGAAATGTTTACGAGTTGGCGAAGAAAAT
TTAGGATTTGCTTTTGAGAAAAGTGATGCTACAGAGAAATGGGGTTTTGG
TGTAGGTATGCCCTTGCGTGGAATGGCAGAGCATGTTTATGGTACATCTT
GCCAATACTCTGGGGATGAGATGAATGAAGCTGAACAGAAAGTTACTGAC
TGTATTGAATATGCTTTTAGGAGAGGTATAAAAAATGCAGATGCTTCTCT
ATTTAATGATATTGGTGGGAAAAATGCTTGgttaaaactttataaagata
tGGCTACACGGTTTCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026631-exon-sc0000580-1491911889:105359..105625 | TCONS_00026631-exon-sc0000580-1491911889:105359..105625 | Clytia hemisphaerica | exon |
| TCONS_00026631-exon-sc0000580-1510915933:105359..105625 | TCONS_00026631-exon-sc0000580-1510915933:105359..105625 | Clytia hemisphaerica | exon |
| TCONS_00026631-exon-sc0000580-1575043694:105359..105625 | TCONS_00026631-exon-sc0000580-1575043694:105359..105625 | Clytia hemisphaerica | exon |
| TCONS_00026631-exon-sc0000580-1491911889:107068..107872 | TCONS_00026631-exon-sc0000580-1491911889:107068..107872 | Clytia hemisphaerica | exon |
| TCONS_00026631-exon-sc0000580-1510915933:107068..107872 | TCONS_00026631-exon-sc0000580-1510915933:107068..107872 | Clytia hemisphaerica | exon |
| TCONS_00026631-exon-sc0000580-1575043694:107068..107872 | TCONS_00026631-exon-sc0000580-1575043694:107068..107872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000580 | supercontig | sc0000580:105359..107872 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
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