TCONS_00011979-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00011979-protein
Unique NameTCONS_00011979-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00011979-protein ID=TCONS_00011979-protein|Name=TCONS_00011979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MNFGPRGGFPGASNASGGRFRNAYQQNGAPNMGQPRGHRPPGPYNTEQIK
IPKPPKQPDKPLPAYMRYSRKVWEKVKAGHPEMKMWDIGKLIGEQWRNLP
EDERQGFFAEYEVEKAEYQDAMKAYHSSAPYRDWLKAKEKAQAAIQEQQM
MEKMIGQQMPKEEPRFQLQQVEDEDDEADFAVKHIATARFQRNHRLITEI
FSEAAVPDAKSIVTRPRLENLKRQVQSLMQHQRKLENEIEEMEGKFEAKR
KKILDNSESFKVKIEELSKPPPPLPSPKPDDEAKKGANEENTEENKEQTP
QEGEEKMEIDQTVKETITNMVDEAVTSPTVENLSNVLSSNNASDEKESIP
ATESGSKQADAAKEVTAVIETDEKETPNTGTPDEAEEKANA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006720XLOC_006720Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00011979TCONS_00011979Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 218..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..391
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..63
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 64..123
e-value: 1.86231E-14
score: 66.8825
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 57..127
e-value: 1.4E-10
score: 51.1
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 44..127
e-value: 6.7E-21
score: 73.8
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 58..125
e-value: 7.6E-17
score: 61.4
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 58..126
score: 15.864
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 42..127

Blast
[Close]
BLAST of TCONS_00011979-protein vs. Swiss-Prot (Human)
Match: SMCE1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 OS=Homo sapiens GN=SMARCE1 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 2.502e-68
Identity = 116/221 (52.49%), Postives = 164/221 (74.21%), Query Frame = 0 
Query:   49 IKIPKPPKQPDKPLPAYMRYSRKVWEKVKAGHPEMKMWDIGKLIGEQWRNLPEDERQGFFAEYEVEKAEYQDAMKAYHSSAPYRDWLKAKEKAQAAIQEQQMMEKMIGQQMPKEEPRFQLQQVEDEDDEAD-FAVKHIATARFQRNHRLITEIFSEAAVPDAKSIVTRPRLENLKRQVQSLMQHQRKLENEIEEMEGKFEAKRKKILDNSESFKVKIEELS 268
            I IPKPPK PDKPL  YMRYSRKVW++VKA +P++K+W+IGK+IG  WR+L ++E+Q +  EYE EK EY ++MKAYH+S  Y  ++ AK +A+AA++E+    +    +M K EP   +Q  ED DD  D F++KH ATARFQRNHRLI+EI SE+ VPD +S+VT  R++ LKRQVQSLM HQRKLE E+ ++E + + K++K L++++SF  +++ L 
Sbjct:   57 ITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQ---SRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLC 274
The following BLAST results are available for this feature:
BLAST of TCONS_00011979-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMCE12.502e-6852.49SWI/SNF-related matrix-associated actin-dependent ... [more]
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