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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011979 ID=TCONS_00011979|Name=TCONS_00011979|organism=Clytia hemisphaerica|type=transcript|length=1522bpRun BLAST on NCBI protein sequence of TCONS_00011979-protein >TCONS_00011979-protein ID=TCONS_00011979-protein|Name=TCONS_00011979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp MNFGPRGGFPGASNASGGRFRNAYQQNGAPNMGQPRGHRPPGPYNTEQIKRun BLAST on NCBI transcript from alignment at sc0000134:253497..266597- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011979 ID=TCONS_00011979|Name=TCONS_00011979|organism=Clytia hemisphaerica|type=transcript|length=13101bp|location=Sequence derived from alignment at sc0000134:253497..266597- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000134:253497..266597- >TCONS_00011979 ID=TCONS_00011979|Name=TCONS_00011979|organism=Clytia hemisphaerica|type=CDS|length=14112bp|location=Sequence derived from alignment at sc0000134:253497..266597- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011979 vs. Swiss-Prot (Human)
Match: SMCE1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 OS=Homo sapiens GN=SMARCE1 PE=1 SV=2) HSP 1 Score: 188.734 bits (478), Expect = 1.257e-53 Identity = 102/197 (51.78%), Postives = 147/197 (74.62%), Query Frame = 2
Query: 344 YMRYSRKVWEKVKAGHPEMKMWDIGKLIGEQWRNLPEDERQGFFAEYEVEKAEYQDAMKAYHSSAPYRDWLXXXXXXXXXXXXXXXXXXXXXXXXPKEEPRFQLQQVXXXXXXAD-FAVKHIATARFQRNHRLITEIFSEAAVPDAKSIVTRPRLENLKRQVQSLMQHQRKLENEIEEMEGKFEAKRKKILDNSESF 931
YMRYSRKVW++VKA +P++K+W+IGK+IG WR+L ++E+Q + EYE EK EY ++MKAYH+S Y ++ AK +A+AA++E+ + + K EP +Q ED DD D F++KH ATARFQRNHRLI+EI SE+ VPD +S+VT R++ LKRQVQSLM HQRKLE E+ ++E + + K++K L++++SF
Sbjct: 73 YMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRME---KGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSF 266 The following BLAST results are available for this feature:
BLAST of TCONS_00011979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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